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  5. Brara.A03895.1

Brara.A03895.1


Description : floral promoter *(CONSTANS) & BBX class-I transcription factor


Gene families : OG_42_0000725 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000725_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.A03895.1
Cluster HCAA Clusters: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
185898 No alias CONSTANS-like 4 0.03 Orthogroups_2024-Update
A4A49_38110 No alias zinc finger protein constans-like 2 0.05 Orthogroups_2024-Update
At2g24790 No alias Zinc finger protein CONSTANS-LIKE 3... 0.07 Orthogroups_2024-Update
At3g02380 No alias Zinc finger protein CONSTANS-LIKE 2... 0.04 Orthogroups_2024-Update
At5g15850 No alias Zinc finger protein CONSTANS-LIKE 1... 0.04 Orthogroups_2024-Update
At5g24930 No alias Zinc finger protein CONSTANS-LIKE 4... 0.06 Orthogroups_2024-Update
At5g57660 No alias Zinc finger protein CONSTANS-LIKE 5... 0.04 Orthogroups_2024-Update
Bradi1g31280 No alias CONSTANS-like 4 0.05 Orthogroups_2024-Update
Brara.B00625.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.04 Orthogroups_2024-Update
Brara.J01176.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.04 Orthogroups_2024-Update
Cre06.g278159 No alias CONSTANS-like 3 0.02 Orthogroups_2024-Update
Glyma.18G278100 No alias CONSTANS-like 2 0.03 Orthogroups_2024-Update
HORVU0Hr1G022380.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU2Hr1G085910.21 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os02g39710 No alias CCT/B-box zinc finger protein, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os04g42020 No alias CCT/B-box zinc finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g06464 No alias CCT/B-box zinc finger protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00015948-RA No alias (at5g24930 : 259.0) CONSTANS-like 4 (COL4); FUNCTIONS... 0.03 Orthogroups_2024-Update
Potri.006G267700 No alias CONSTANS-like 4 0.03 Orthogroups_2024-Update
Potri.017G107500 No alias CONSTANS-like 2 0.03 Orthogroups_2024-Update
Potri.T016900 No alias CONSTANS-like 2 0.09 Orthogroups_2024-Update
Potri.T094400 No alias CONSTANS-like 5 0.05 Orthogroups_2024-Update
Pp1s364_5V6 No alias col3 gene for putative COSTANS-like 3 protein COL3 0.02 Orthogroups_2024-Update
Pp1s371_27V6 No alias col1 gene for putative CONSTANS-like 1 protein COL1 0.02 Orthogroups_2024-Update
Seita.4G192300.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.03 Orthogroups_2024-Update
Sobic.004G211200.1 No alias floral promoter *(CONSTANS) & BBX class-I transcription factor 0.03 Orthogroups_2024-Update
Solyc02g089520 No alias CONSTANS protein (AHRD V3.3 *** C0Z3T8_SOLTU) 0.03 Orthogroups_2024-Update
Solyc02g089540 No alias CONSTANS 1 0.03 Orthogroups_2024-Update
Sopen08g002490 No alias CCT motif 0.06 Orthogroups_2024-Update
Sopen12g032330 No alias CCT motif 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005991 trehalose metabolic process IEP Predicted GO
BP GO:0005992 trehalose biosynthetic process IEP Predicted GO
BP GO:0006020 inositol metabolic process IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
BP GO:0009312 oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0010921 regulation of phosphatase activity IEP Predicted GO
BP GO:0016051 carbohydrate biosynthetic process IEP Predicted GO
BP GO:0016052 carbohydrate catabolic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0019310 inositol catabolic process IEP Predicted GO
MF GO:0019902 phosphatase binding IEP Predicted GO
MF GO:0019903 protein phosphatase binding IEP Predicted GO
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Predicted GO
BP GO:0035303 regulation of dephosphorylation IEP Predicted GO
BP GO:0035304 regulation of protein dephosphorylation IEP Predicted GO
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP Predicted GO
BP GO:0044262 cellular carbohydrate metabolic process IEP Predicted GO
BP GO:0044275 cellular carbohydrate catabolic process IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
BP GO:0046351 disaccharide biosynthetic process IEP Predicted GO
MF GO:0050113 inositol oxygenase activity IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR010402 CCT_domain 252 294
IPR000315 Znf_B-box 48 93
No external refs found!