Brara.A03903.1

Description : S-adenosyl methionine decarboxylase & EC_4.1 carbon-carbon lyase

Gene families : OG_42_0001259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001259_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.A03903.1
Cluster	HCAA Clusters: Cluster_56

Target	Alias	Description	ECC score	Gene Family Method
At5g15950	No alias	S-adenosylmethionine decarboxylase proenzyme 2...	0.04	Orthogroups_2024-Update
Brara.C02987.1	No alias	S-adenosyl methionine decarboxylase & EC_4.1 carbon-carbon lyase	0.07	Orthogroups_2024-Update
Cre03.g205900	No alias	S-adenosylmethionine decarboxylase	0.02	Orthogroups_2024-Update
GRMZM2G125635	No alias	Adenosylmethionine decarboxylase family protein	0.05	Orthogroups_2024-Update
GRMZM2G154397	No alias	Adenosylmethionine decarboxylase family protein	0.03	Orthogroups_2024-Update
GRMZM2G366392	No alias	Adenosylmethionine decarboxylase family protein	0.03	Orthogroups_2024-Update
Glyma.01G071300	No alias	Adenosylmethionine decarboxylase family protein	0.03	Orthogroups_2024-Update
HORVU2Hr1G086140.5	No alias	S-adenosyl methionine decarboxylase & EC_4.1 carbon-carbon lyase	0.05	Orthogroups_2024-Update
HORVU6Hr1G056110.3	No alias	S-adenosyl methionine decarboxylase & EC_4.1 carbon-carbon lyase	0.05	Orthogroups_2024-Update
Potri.018G101500	No alias	S-adenosylmethionine decarboxylase	0.03	Orthogroups_2024-Update
Pp1s335_22V6	No alias	s-adenosylmethionine decarboxylase	0.04	Orthogroups_2024-Update
Seita.1G229400.1	No alias	S-adenosyl methionine decarboxylase & EC_4.1 carbon-carbon lyase	0.03	Orthogroups_2024-Update
Sobic.006G135600.4	No alias	S-adenosyl methionine decarboxylase & EC_4.1 carbon-carbon lyase	0.02	Orthogroups_2024-Update
Solyc02g089610	No alias	S-adenosylmethionine decarboxylase 2	0.03	Orthogroups_2024-Update
Solyc05g010420	No alias	S-adenosylmethionine decarboxylase proenzyme (AHRD V3.3...	0.04	Orthogroups_2024-Update
Sopen02g034330	No alias	Adenosylmethionine decarboxylase	0.03	Orthogroups_2024-Update
Sopen05g006210	No alias	Adenosylmethionine decarboxylase	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004014	adenosylmethionine decarboxylase activity	IEA	16Dec
BP	GO:0006576	cellular biogenic amine metabolic process	None	Extended
BP	GO:0006595	polyamine metabolic process	None	Extended
BP	GO:0006596	polyamine biosynthetic process	None	Extended
BP	GO:0006597	spermine biosynthetic process	IEA	16Dec
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008215	spermine metabolic process	None	Extended
BP	GO:0008216	spermidine metabolic process	None	Extended
BP	GO:0008295	spermidine biosynthetic process	IEA	16Dec
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009309	amine biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016829	lyase activity	None	Extended
MF	GO:0016830	carbon-carbon lyase activity	None	Extended
MF	GO:0016831	carboxy-lyase activity	None	Extended
BP	GO:0017144	drug metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0042401	cellular biogenic amine biosynthetic process	None	Extended
BP	GO:0044106	cellular amine metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0097164	ammonium ion metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Predicted GO
MF	GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	IEP	Predicted GO
MF	GO:0004089	carbonate dehydratase activity	IEP	Predicted GO
MF	GO:0004564	beta-fructofuranosidase activity	IEP	Predicted GO
MF	GO:0004779	sulfate adenylyltransferase activity	IEP	Predicted GO
MF	GO:0004781	sulfate adenylyltransferase (ATP) activity	IEP	Predicted GO
CC	GO:0005672	transcription factor TFIIA complex	IEP	Predicted GO
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0006487	protein N-linked glycosylation	IEP	Predicted GO
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006787	porphyrin-containing compound catabolic process	IEP	Predicted GO
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Predicted GO
CC	GO:0009507	chloroplast	IEP	Predicted GO
CC	GO:0009536	plastid	IEP	Predicted GO
MF	GO:0015035	protein disulfide oxidoreductase activity	IEP	Predicted GO
MF	GO:0015036	disulfide oxidoreductase activity	IEP	Predicted GO
BP	GO:0015994	chlorophyll metabolic process	IEP	Predicted GO
BP	GO:0015996	chlorophyll catabolic process	IEP	Predicted GO
BP	GO:0033015	tetrapyrrole catabolic process	IEP	Predicted GO
BP	GO:0042440	pigment metabolic process	IEP	Predicted GO
BP	GO:0046149	pigment catabolic process	IEP	Predicted GO
MF	GO:0047746	chlorophyllase activity	IEP	Predicted GO
BP	GO:0051187	cofactor catabolic process	IEP	Predicted GO
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Predicted GO
MF	GO:0070566	adenylyltransferase activity	IEP	Predicted GO
MF	GO:0140110	transcription regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001985	S-AdoMet_decarboxylase	7	251

External Links

No external refs found!

Brara.A03903.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation