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Description : RING-H2-class ATL-subclass E3 ubiquitin ligase
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.B00209.1 | |
| Cluster | HCAA Clusters: Cluster_395 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_29197 | No alias | ring-h2 finger protein atl73 | 0.02 | Orthogroups_2024-Update | |
| A4A49_36505 | No alias | e3 ubiquitin-protein ligase atl6 | 0.03 | Orthogroups_2024-Update | |
| At1g53820 | No alias | RING-H2 finger protein ATL60... | 0.03 | Orthogroups_2024-Update | |
| At1g72220 | No alias | RING-H2 finger protein ATL54... | 0.04 | Orthogroups_2024-Update | |
| At2g35910 | No alias | RING-H2 finger protein ATL70... | 0.03 | Orthogroups_2024-Update | |
| At3g14320 | No alias | Putative RING-H2 finger protein ATL61... | 0.03 | Orthogroups_2024-Update | |
| At5g41450 | No alias | RING/U-box superfamily protein... | 0.04 | Orthogroups_2024-Update | |
| Bradi1g60390 | No alias | hypoxia-responsive family protein / zinc finger... | 0.03 | Orthogroups_2024-Update | |
| Bradi4g44454 | No alias | Zinc finger, C3HC4 type (RING finger) family protein | 0.02 | Orthogroups_2024-Update | |
| Brara.A03045.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Brara.E00872.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Brara.G01336.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G004519 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.10G083100 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.11G191800 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| HORVU5Hr1G096480.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| MA_10431388g0020 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
| MA_634100g0010 | No alias | no hits & (original description: no original description) | 0.03 | Orthogroups_2024-Update | |
| MA_6934973g0010 | No alias | (at5g01880 : 125.0) RING/U-box superfamily protein;... | 0.03 | Orthogroups_2024-Update | |
| PSME_00003016-RA | No alias | (at1g72200 : 114.0) RING/U-box superfamily protein;... | 0.02 | Orthogroups_2024-Update | |
| PSME_00003023-RA | No alias | (at1g72200 : 141.0) RING/U-box superfamily protein;... | 0.03 | Orthogroups_2024-Update | |
| PSME_00034763-RA | No alias | (at5g05280 : 85.1) RING/U-box superfamily protein;... | 0.02 | Orthogroups_2024-Update | |
| Potri.005G113200 | No alias | receptor homology region transmembrane domain ring H2... | 0.03 | Orthogroups_2024-Update | |
| Seita.1G197500.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Seita.1G197600.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Seita.2G238400.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Sobic.009G153100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Solyc02g067700 | No alias | RING/U-box superfamily protein, putative (AHRD V3.3 ***... | 0.03 | Orthogroups_2024-Update | |
| Sopen04g006320 | No alias | Ring finger domain | 0.03 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0002376 | immune system process | IEP | Predicted GO |
| MF | GO:0003885 | D-arabinono-1,4-lactone oxidase activity | IEP | Predicted GO |
| MF | GO:0004518 | nuclease activity | IEP | Predicted GO |
| MF | GO:0004519 | endonuclease activity | IEP | Predicted GO |
| MF | GO:0004521 | endoribonuclease activity | IEP | Predicted GO |
| MF | GO:0004523 | RNA-DNA hybrid ribonuclease activity | IEP | Predicted GO |
| MF | GO:0004540 | ribonuclease activity | IEP | Predicted GO |
| BP | GO:0006955 | immune response | IEP | Predicted GO |
| MF | GO:0008194 | UDP-glycosyltransferase activity | IEP | Predicted GO |
| MF | GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors | IEP | Predicted GO |
| MF | GO:0016891 | endoribonuclease activity, producing 5'-phosphomonoesters | IEP | Predicted GO |
| MF | GO:0016893 | endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters | IEP | Predicted GO |
| MF | GO:0016899 | oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor | IEP | Predicted GO |
| BP | GO:0032502 | developmental process | IEP | Predicted GO |
| BP | GO:0045087 | innate immune response | IEP | Predicted GO |
| BP | GO:0048364 | root development | IEP | Predicted GO |
| BP | GO:0048367 | shoot system development | IEP | Predicted GO |
| BP | GO:0048731 | system development | IEP | Predicted GO |
| BP | GO:0048856 | anatomical structure development | IEP | Predicted GO |
| BP | GO:0099402 | plant organ development | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 130 | 172 |
| No external refs found! |