1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.B00457.1

Brara.B00457.1


Description : PHD finger transcription factor & component *(DDP) of ISWI chromatin remodeling complex


Gene families : OG_42_0001571 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001571_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B00457.1
Cluster HCAA Clusters: Cluster_311

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G128176 No alias DNA binding;zinc ion binding;DNA binding 0.02 Orthogroups_2024-Update
Glyma.12G021900 No alias DNA binding;zinc ion binding;DNA binding 0.03 Orthogroups_2024-Update
HORVU2Hr1G022310.4 No alias PHD finger transcription factor & component *(DDP) of... 0.03 Orthogroups_2024-Update
Pp1s311_65V6 No alias dna binding 0.03 Orthogroups_2024-Update
Solyc11g065140 No alias No description available 0.03 Orthogroups_2024-Update
evm.model.tig00000113.21 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Predicted GO
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Predicted GO
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Predicted GO
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
BP GO:0035556 intracellular signal transduction IEP Predicted GO
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Predicted GO
BP GO:1901264 carbohydrate derivative transport IEP Predicted GO
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR018501 DDT_dom 357 408
No external refs found!