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  5. Brara.B00559.1

Brara.B00559.1


Description : Unknown function


Gene families : OG_42_0000814 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000814_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B00559.1
Cluster HCAA Clusters: Cluster_220

Target Alias Description ECC score Gene Family Method Actions
Cre01.g021600 No alias DEAD box RNA helicase 1 0.02 Orthogroups_2024-Update
Cre06.g291150 No alias DEAD box RNA helicase family protein 0.02 Orthogroups_2024-Update
Potri.015G083000 No alias P-loop containing nucleoside triphosphate hydrolases... 0.04 Orthogroups_2024-Update
Sobic.005G220000.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen03g031450 No alias DEAD/DEAH box helicase 0.03 Orthogroups_2024-Update
Sopen12g013640 No alias DEAD/DEAH box helicase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
MF GO:0005524 ATP binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031491 nucleosome binding IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
MF GO:0044877 protein-containing complex binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 189 358
IPR001202 WW_dom 19 49
IPR001650 Helicase_C 395 503
No external refs found!