Brara.B00590.1

Description : HD-ZIP I/II-type transcription factor

Gene families : OG_42_0000105 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000105_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.B00590.1
Cluster	HCAA Clusters: Cluster_273

Target	Alias	Description	ECC score	Gene Family Method
A4A49_10256	No alias	homeobox-leucine zipper protein hat5	0.03	Orthogroups_2024-Update
A4A49_24322	No alias	homeobox-leucine zipper protein athb-13	0.03	Orthogroups_2024-Update
At1g69780	No alias	Homeobox-leucine zipper protein ATHB-13...	0.03	Orthogroups_2024-Update
At4g40060	No alias	HB16 [Source:UniProtKB/TrEMBL;Acc:A0A178V0P3]	0.04	Orthogroups_2024-Update
At5g66700	No alias	Homeobox-leucine zipper protein ATHB-53...	0.03	Orthogroups_2024-Update
Bradi1g71930	No alias	homeobox 3	0.08	Orthogroups_2024-Update
Bradi1g73190	No alias	Homeobox-leucine zipper protein family	0.05	Orthogroups_2024-Update
Bradi3g38600	No alias	homeobox protein 5	0.03	Orthogroups_2024-Update
Bradi4g29380	No alias	homeobox 1	0.04	Orthogroups_2024-Update
Brara.B01882.1	No alias	HD-ZIP I/II-type transcription factor	0.04	Orthogroups_2024-Update
Brara.D02811.1	No alias	HD-ZIP I/II-type transcription factor	0.04	Orthogroups_2024-Update
Brara.G02910.1	No alias	HD-ZIP I/II-type transcription factor	0.04	Orthogroups_2024-Update
Brara.H01761.1	No alias	HD-ZIP I/II-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I04272.1	No alias	HD-ZIP I/II-type transcription factor	0.03	Orthogroups_2024-Update
Brara.K01296.1	No alias	HD-ZIP I/II-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G122076	No alias	homeobox 1	0.03	Orthogroups_2024-Update
Glyma.02G058900	No alias	homeobox protein 40	0.06	Orthogroups_2024-Update
HORVU4Hr1G078410.2	No alias	HD-ZIP I/II-type transcription factor	0.03	Orthogroups_2024-Update
Kfl00914_0040	kfl00914_0040_v1.1	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
LOC_Os03g08960	No alias	homeobox associated leucine zipper, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os03g10210	No alias	homeobox domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os07g39320	No alias	homeobox domain containing protein, expressed	0.02	Orthogroups_2024-Update
LOC_Os09g29460	No alias	homeobox associated leucine zipper, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os09g35910	No alias	homeobox associated leucine zipper, putative, expressed	0.02	Orthogroups_2024-Update
MA_10428916g0010	No alias	(at3g01470 : 117.0) Encodes a homeodomain leucine zipper...	0.03	Orthogroups_2024-Update
MA_169305g0010	No alias	(at2g22430 : 149.0) Encodes a homeodomain leucine zipper...	0.02	Orthogroups_2024-Update
PSME_00014389-RA	No alias	(at1g69780 : 146.0) Encodes a homeodomain leucine zipper...	0.02	Orthogroups_2024-Update
PSME_00014391-RA	No alias	(at1g69780 : 134.0) Encodes a homeodomain leucine zipper...	0.03	Orthogroups_2024-Update
PSME_00033843-RA	No alias	(at3g01470 : 181.0) Encodes a homeodomain leucine zipper...	0.03	Orthogroups_2024-Update
Potri.008G194400	No alias	homeobox 1	0.03	Orthogroups_2024-Update
Potri.010G093400	No alias	Homeobox-leucine zipper protein family	0.04	Orthogroups_2024-Update
Potri.017G081700	No alias	homeobox 3	0.04	Orthogroups_2024-Update
Pp1s31_96V6	No alias	dna-binding protein	0.03	Orthogroups_2024-Update
Seita.2G193200.1	No alias	HD-ZIP I/II-type transcription factor	0.03	Orthogroups_2024-Update
Seita.2G284000.1	No alias	HD-ZIP I/II-type transcription factor	0.03	Orthogroups_2024-Update
Seita.9G503700.1	No alias	HD-ZIP I/II-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.007G226600.3	No alias	HD-ZIP I/II-type transcription factor	0.03	Orthogroups_2024-Update
Solyc03g082550	No alias	Homeobox leucine zipper (AHRD V3.3 - J7FWS7_ROSRU)	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004089	carbonate dehydratase activity	IEP	Predicted GO
BP	GO:0007275	multicellular organism development	IEP	Predicted GO
MF	GO:0016836	hydro-lyase activity	IEP	Predicted GO
BP	GO:0032501	multicellular organismal process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003106	Leu_zip_homeo	169	208
IPR001356	Homeobox_dom	114	167

External Links

No external refs found!

Brara.B00590.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation