Brara.B00641.1

Description : component *(eS7) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0002228 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002228_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.B00641.1
Cluster	HCAA Clusters: Cluster_102

Target	Alias	Description	ECC score	Gene Family Method
A4A49_59553	No alias	40s ribosomal protein s7-1	0.03	Orthogroups_2024-Update
Bradi1g65150	No alias	Ribosomal protein S7e family protein	0.1	Orthogroups_2024-Update
Bradi3g23310	No alias	Ribosomal protein S7e family protein	0.04	Orthogroups_2024-Update
Brara.C00708.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Brara.C02996.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.08	Orthogroups_2024-Update
Brara.J01899.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Cre12.g498900	No alias	Ribosomal protein S7e family protein	0.09	Orthogroups_2024-Update
Glyma.05G238000	No alias	Ribosomal protein S7e family protein	0.08	Orthogroups_2024-Update
Glyma.07G092900	No alias	Ribosomal protein S7e family protein	0.04	Orthogroups_2024-Update
Glyma.08G045100	No alias	Ribosomal protein S7e family protein	0.1	Orthogroups_2024-Update
Glyma.09G183300	No alias	Ribosomal protein S7e family protein	0.13	Orthogroups_2024-Update
Glyma.19G049200	No alias	Ribosomal protein S7e family protein	0.09	Orthogroups_2024-Update
HORVU1Hr1G029870.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.05	Orthogroups_2024-Update
HORVU4Hr1G055230.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Kfl00437_0020	kfl00437_0020_v1.1	(at1g48830 : 254.0) Ribosomal protein S7e family...	0.03	Orthogroups_2024-Update
Mp6g08120.1	No alias	component RPS7 of SSU proteome	0.07	Orthogroups_2024-Update
PSME_00000777-RA	No alias	(q9xet4\|rs7_secce : 317.0) 40S ribosomal protein S7 -...	0.03	Orthogroups_2024-Update
Potri.006G087900	No alias	Ribosomal protein S7e family protein	0.05	Orthogroups_2024-Update
Pp1s134_167V6	No alias	40s ribosomal protein expressed	0.09	Orthogroups_2024-Update
Pp1s152_7V6	No alias	40s ribosomal protein expressed	0.13	Orthogroups_2024-Update
Pp1s365_30V6	No alias	40S ribosomal protein S7 [Brassica oleracea]	0.04	Orthogroups_2024-Update
Pp1s49_260V6	No alias	40s ribosomal protein	0.07	Orthogroups_2024-Update
Seita.3G280800.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Seita.9G248800.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.03	Orthogroups_2024-Update
Seita.9G437500.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.09	Orthogroups_2024-Update
Sobic.001G403500.1	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.11	Orthogroups_2024-Update
Sobic.009G101700.2	No alias	component *(eS7) of small ribosomal-subunit (SSU) proteome	0.07	Orthogroups_2024-Update
Solyc03g119360	No alias	40S ribosomal protein S7-like protein (AHRD V3.3 ***...	0.12	Orthogroups_2024-Update
Solyc06g069090	No alias	40S ribosomal protein S7-like protein (AHRD V3.3 ***...	0.12	Orthogroups_2024-Update
Sopen03g038230	No alias	Ribosomal protein S7e	0.05	Orthogroups_2024-Update
Sopen06g026370	No alias	Ribosomal protein S7e	0.09	Orthogroups_2024-Update
evm.model.contig_2068.1	No alias	(at1g48830 : 206.0) Ribosomal protein S7e family...	0.09	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	Predicted GO
BP	GO:0000966	RNA 5'-end processing	IEP	Predicted GO
BP	GO:0001682	tRNA 5'-leader removal	IEP	Predicted GO
BP	GO:0002097	tRNA wobble base modification	IEP	Predicted GO
BP	GO:0002098	tRNA wobble uridine modification	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0004527	exonuclease activity	IEP	Predicted GO
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	Predicted GO
BP	GO:0006082	organic acid metabolic process	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006399	tRNA metabolic process	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	Predicted GO
BP	GO:0006520	cellular amino acid metabolic process	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
BP	GO:0008033	tRNA processing	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
MF	GO:0009982	pseudouridine synthase activity	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016874	ligase activity	IEP	Predicted GO
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	Predicted GO
BP	GO:0019752	carboxylic acid metabolic process	IEP	Predicted GO
CC	GO:0030677	ribonuclease P complex	IEP	Predicted GO
BP	GO:0034227	tRNA thio-modification	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034471	ncRNA 5'-end processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0043038	amino acid activation	IEP	Predicted GO
BP	GO:0043039	tRNA aminoacylation	IEP	Predicted GO
BP	GO:0043436	oxoacid metabolic process	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
MF	GO:0097159	organic cyclic compound binding	IEP	Predicted GO
BP	GO:0099116	tRNA 5'-end processing	IEP	Predicted GO
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Predicted GO
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
MF	GO:1901363	heterocyclic compound binding	IEP	Predicted GO
CC	GO:1902555	endoribonuclease complex	IEP	Predicted GO
CC	GO:1905348	endonuclease complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000554	Ribosomal_S7e	7	186

External Links

No external refs found!

Brara.B00641.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation