1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.B00705.1

Brara.B00705.1


Description : HD-ZIP IV-type transcription factor


Gene families : OG_42_0000114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000114_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B00705.1
Cluster HCAA Clusters: Cluster_354

Target Alias Description ECC score Gene Family Method Actions
At1g05230 No alias AT1G05230 protein [Source:UniProtKB/TrEMBL;Acc:B9DFH8] 0.03 Orthogroups_2024-Update
At2g32370 No alias Homeobox-leucine zipper protein HDG3... 0.06 Orthogroups_2024-Update
Bradi2g52160 No alias protodermal factor 2 0.02 Orthogroups_2024-Update
Brara.H00913.1 No alias HD-ZIP IV-type transcription factor 0.03 Orthogroups_2024-Update
Glyma.13G288800 No alias homeodomain GLABROUS 2 0.03 Orthogroups_2024-Update
HORVU7Hr1G073450.1 No alias HD-ZIP IV-type transcription factor 0.03 Orthogroups_2024-Update
PSME_00042191-RA No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
Potri.002G154700 No alias Homeobox-leucine zipper family protein / lipid-binding... 0.03 Orthogroups_2024-Update
Seita.6G039900.1 No alias HD-ZIP IV-type transcription factor 0.02 Orthogroups_2024-Update
Solyc05g015020 No alias Homeobox-leucine zipper protein (AHRD V3.3 *-* A0A059UE00_9POAL) 0.04 Orthogroups_2024-Update
Solyc12g005830 No alias Homeobox-leucine zipper family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0008289 lipid binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005384 manganese ion transmembrane transporter activity IEP Predicted GO
BP GO:0006873 cellular ion homeostasis IEP Predicted GO
BP GO:0006875 cellular metal ion homeostasis IEP Predicted GO
CC GO:0009522 photosystem I IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
BP GO:0019725 cellular homeostasis IEP Predicted GO
BP GO:0030003 cellular cation homeostasis IEP Predicted GO
BP GO:0030026 cellular manganese ion homeostasis IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Predicted GO
BP GO:0046916 cellular transition metal ion homeostasis IEP Predicted GO
BP GO:0048878 chemical homeostasis IEP Predicted GO
BP GO:0050801 ion homeostasis IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
BP GO:0055065 metal ion homeostasis IEP Predicted GO
BP GO:0055071 manganese ion homeostasis IEP Predicted GO
BP GO:0055076 transition metal ion homeostasis IEP Predicted GO
BP GO:0055080 cation homeostasis IEP Predicted GO
BP GO:0055082 cellular chemical homeostasis IEP Predicted GO
BP GO:0098771 inorganic ion homeostasis IEP Predicted GO
InterPro domains Description Start Stop
IPR001356 Homeobox_dom 28 79
IPR002913 START_lipid-bd_dom 224 442
No external refs found!