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  5. Brara.B00878.1

Brara.B00878.1


Description : component *(eS8) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001226 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001226_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B00878.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
A4A49_00086 No alias 40s ribosomal protein s8 0.11 Orthogroups_2024-Update
A4A49_00202 No alias 40s ribosomal protein s8 0.08 Orthogroups_2024-Update
A4A49_17431 No alias 40s ribosomal protein s8 0.06 Orthogroups_2024-Update
A4A49_61985 No alias 40s ribosomal protein s8 0.06 Orthogroups_2024-Update
A4A49_62566 No alias 40s ribosomal protein s8 0.05 Orthogroups_2024-Update
Bradi1g51357 No alias Ribosomal protein S8e family protein 0.19 Orthogroups_2024-Update
Bradi3g43560 No alias Ribosomal protein S8e family protein 0.18 Orthogroups_2024-Update
Brara.C00929.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.19 Orthogroups_2024-Update
Cre06.g272800 No alias Ribosomal protein S8e family protein 0.17 Orthogroups_2024-Update
GRMZM2G030228 No alias Ribosomal protein S8e family protein 0.13 Orthogroups_2024-Update
GRMZM2G336875 No alias Ribosomal protein S8e family protein 0.06 Orthogroups_2024-Update
Glyma.03G086400 No alias Ribosomal protein S8e family protein 0.18 Orthogroups_2024-Update
Glyma.08G346500 No alias Ribosomal protein S8e family protein 0.09 Orthogroups_2024-Update
Glyma.16G087700 No alias Ribosomal protein S8e family protein 0.18 Orthogroups_2024-Update
Glyma.18G157300 No alias Ribosomal protein S8e family protein 0.13 Orthogroups_2024-Update
HORVU2Hr1G067370.5 No alias Unknown function 0.14 Orthogroups_2024-Update
Kfl00279_0040 kfl00279_0040_v1.1 (p49199|rs8_orysa : 268.0) 40S ribosomal protein S8 -... 0.05 Orthogroups_2024-Update
LOC_Os02g28810 No alias ribosomal protein, putative, expressed 0.06 Orthogroups_2024-Update
MA_14571g0010 No alias (p49199|rs8_orysa : 265.0) 40S ribosomal protein S8 -... 0.09 Orthogroups_2024-Update
MA_9738483g0010 No alias (p49199|rs8_orysa : 198.0) 40S ribosomal protein S8 -... 0.05 Orthogroups_2024-Update
Mp2g16300.1 No alias component RPS8 of SSU proteome 0.15 Orthogroups_2024-Update
PSME_00001605-RA No alias (q08069|rs8_maize : 279.0) 40S ribosomal protein S8 -... 0.08 Orthogroups_2024-Update
Potri.001G262100 No alias Ribosomal protein S8e family protein 0.1 Orthogroups_2024-Update
Potri.009G056900 No alias Ribosomal protein S8e family protein 0.08 Orthogroups_2024-Update
Potri.017G110000 No alias Ribosomal protein S8e family protein 0.08 Orthogroups_2024-Update
Pp1s162_83V6 No alias 40s ribosomal protein 0.18 Orthogroups_2024-Update
Pp1s223_73V6 No alias 40s ribosomal protein 0.14 Orthogroups_2024-Update
Pp1s227_85V6 No alias 40s ribosomal protein 0.17 Orthogroups_2024-Update
Pp1s292_14V6 No alias 40s ribosomal protein 0.19 Orthogroups_2024-Update
Pp1s46_183V6 No alias 40s ribosomal protein 0.02 Orthogroups_2024-Update
Seita.1G314000.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Seita.7G057900.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Sobic.004G244800.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.21 Orthogroups_2024-Update
Sobic.006G035900.1 No alias component *(eS8) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Solyc06g007570 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4C3D8_SOLLC) 0.17 Orthogroups_2024-Update
Solyc06g083180 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4CAH3_SOLLC) 0.21 Orthogroups_2024-Update
Solyc07g065170 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4CHJ6_SOLLC) 0.14 Orthogroups_2024-Update
Solyc09g057650 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4CTF6_SOLLC) 0.11 Orthogroups_2024-Update
Solyc10g006070 No alias 40S ribosomal protein S8 (AHRD V3.3 *** K4CXD9_SOLLC) 0.05 Orthogroups_2024-Update
Sopen06g002470 No alias Ribosomal protein S8e 0.13 Orthogroups_2024-Update
Sopen06g034570 No alias Ribosomal protein S8e 0.15 Orthogroups_2024-Update
Sopen07g033390 No alias Ribosomal protein S8e 0.15 Orthogroups_2024-Update
Sopen09g021090 No alias Ribosomal protein S8e 0.09 Orthogroups_2024-Update
Sopen10g002020 No alias Ribosomal protein S8e 0.15 Orthogroups_2024-Update
evm.model.contig_4462.6 No alias (q08069|rs8_maize : 255.0) 40S ribosomal protein S8 -... 0.27 Orthogroups_2024-Update
evm.model.tig00020610.79 No alias (p49199|rs8_orysa : 269.0) 40S ribosomal protein S8 -... 0.08 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP Predicted GO
CC GO:0000152 nuclear ubiquitin ligase complex IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0003909 DNA ligase activity IEP Predicted GO
MF GO:0003910 DNA ligase (ATP) activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0003937 IMP cyclohydrolase activity IEP Predicted GO
MF GO:0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity IEP Predicted GO
MF GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005680 anaphase-promoting complex IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006163 purine nucleotide metabolic process IEP Predicted GO
BP GO:0006164 purine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006188 IMP biosynthetic process IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006753 nucleoside phosphate metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009117 nucleotide metabolic process IEP Predicted GO
BP GO:0009123 nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009150 purine ribonucleotide metabolic process IEP Predicted GO
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Predicted GO
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009165 nucleotide biosynthetic process IEP Predicted GO
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Predicted GO
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Predicted GO
BP GO:0009259 ribonucleotide metabolic process IEP Predicted GO
BP GO:0009260 ribonucleotide biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016842 amidine-lyase activity IEP Predicted GO
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019238 cyclohydrolase activity IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
BP GO:0019637 organophosphate metabolic process IEP Predicted GO
BP GO:0019693 ribose phosphate metabolic process IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046040 IMP metabolic process IEP Predicted GO
BP GO:0046390 ribose phosphate biosynthetic process IEP Predicted GO
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072521 purine-containing compound metabolic process IEP Predicted GO
BP GO:0072522 purine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090407 organophosphate biosynthetic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
BP GO:1901135 carbohydrate derivative metabolic process IEP Predicted GO
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Predicted GO
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR022309 Ribosomal_S8e/biogenesis_NSA2 5 205
No external refs found!