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  5. Brara.B00951.1

Brara.B00951.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B00951.1
Cluster HCAA Clusters: Cluster_214

Target Alias Description ECC score Gene Family Method Actions
34785 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
99677 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
At1g25360 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.04 Orthogroups_2024-Update
Bradi2g58450 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g32220 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Cre06.g298300 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.01 Orthogroups_2024-Update
Glyma.02G160400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G029200.4 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G124480.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU3Hr1G115530.39 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU7Hr1G030840.1 No alias RNA editing factor *(MEF29) 0.04 Orthogroups_2024-Update
HORVU7Hr1G114390.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os11g01836 No alias pentatricopeptide, putative, expressed 0.03 Orthogroups_2024-Update
MA_474261g0010 No alias (at3g12770 : 471.0) Encodes a pentatricopeptide repeat... 0.03 Orthogroups_2024-Update
MA_767209g0010 No alias (at3g49170 : 650.0) embryo defective 2261 (EMB2261);... 0.03 Orthogroups_2024-Update
MA_79624g0010 No alias (at3g25970 : 531.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00002137-RA No alias (at2g22070 : 559.0) pentatricopeptide (PPR)... 0.04 Orthogroups_2024-Update
PSME_00020124-RA No alias (at5g09950 : 677.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00039504-RA No alias (at4g13650 : 612.0) Pentatricopeptide repeat (PPR)... 0.03 Orthogroups_2024-Update
PSME_00042901-RA No alias (at4g33170 : 526.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00046347-RA No alias (at2g13600 : 438.0) Pentatricopeptide repeat (PPR)... 0.05 Orthogroups_2024-Update
PSME_00050906-RA No alias (at4g33170 : 629.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
Seita.1G215700.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
CC GO:0030117 membrane coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
BP GO:0048193 Golgi vesicle transport IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 511 557
IPR002885 Pentatricopeptide_repeat 407 455
IPR002885 Pentatricopeptide_repeat 306 348
IPR002885 Pentatricopeptide_repeat 109 157
IPR002885 Pentatricopeptide_repeat 280 305
IPR002885 Pentatricopeptide_repeat 212 232
IPR002885 Pentatricopeptide_repeat 184 208
IPR002885 Pentatricopeptide_repeat 484 506
IPR002885 Pentatricopeptide_repeat 585 609
IPR032867 DYW_dom 721 813
No external refs found!