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  5. Brara.B00992.1

Brara.B00992.1


Description : PHD finger transcription factor & component *(DDP) of ISWI chromatin remodeling complex


Gene families : OG_42_0001571 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001571_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B00992.1
Cluster HCAA Clusters: Cluster_293

Target Alias Description ECC score Gene Family Method Actions
Glyma.11G095800 No alias DNA binding;zinc ion binding;DNA binding 0.03 Orthogroups_2024-Update
Sopen11g024880 No alias DDT domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004345 glucose-6-phosphate dehydrogenase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005811 lipid droplet IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
BP GO:0019915 lipid storage IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 401 443
IPR018501 DDT_dom 179 232
IPR028942 WHIM1_dom 292 325
No external refs found!