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  5. Brara.B01062.1

Brara.B01062.1


Description : component *(uS8) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0001161 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001161_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B01062.1
Cluster HCAA Clusters: Cluster_10

Target Alias Description ECC score Gene Family Method Actions
228163 No alias Ribosomal protein S8 family protein 0.1 Orthogroups_2024-Update
At5g59850 No alias AT1G07770 protein [Source:UniProtKB/TrEMBL;Acc:B9DI04] 0.08 Orthogroups_2024-Update
Bradi2g23110 No alias ribosomal protein S15A 0.15 Orthogroups_2024-Update
Bradi2g54450 No alias ribosomal protein S15A 0.17 Orthogroups_2024-Update
Cre05.g234637 No alias Ribosomal protein S8 family protein 0.16 Orthogroups_2024-Update
GRMZM2G083497 No alias ribosomal protein S15A 0.13 Orthogroups_2024-Update
Glyma.01G240000 No alias ribosomal protein S15A 0.04 Orthogroups_2024-Update
Glyma.07G255500 No alias ribosomal protein S15A 0.11 Orthogroups_2024-Update
Glyma.11G003600 No alias ribosomal protein S15A 0.06 Orthogroups_2024-Update
Glyma.11G003700 No alias ribosomal protein S15A 0.06 Orthogroups_2024-Update
Glyma.15G102550 No alias ribosomal protein S15A 0.09 Orthogroups_2024-Update
Glyma.17G018600 No alias ribosomal protein S15A 0.18 Orthogroups_2024-Update
HORVU1Hr1G072060.1 No alias component *(uS8) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
HORVU3Hr1G086930.1 No alias component *(uS8) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Kfl00864_0040 kfl00864_0040_v1.1 (at5g59850 : 230.0) Ribosomal protein S8 family protein;... 0.06 Orthogroups_2024-Update
LOC_Os07g10720 No alias 40S ribosomal protein S15a, putative, expressed 0.08 Orthogroups_2024-Update
MA_10427318g0020 No alias (at3g46040 : 214.0) Regulated by TCP20.; ribosomal... 0.07 Orthogroups_2024-Update
MA_57835g0010 No alias (at3g46040 : 223.0) Regulated by TCP20.; ribosomal... 0.1 Orthogroups_2024-Update
Mp8g06510.1 No alias component RPS15a of SSU proteome 0.06 Orthogroups_2024-Update
Mp8g13010.1 No alias component RPS15a of SSU proteome 0.04 Orthogroups_2024-Update
PSME_00001260-RA No alias (at5g59850 : 244.0) Ribosomal protein S8 family protein;... 0.02 Orthogroups_2024-Update
PSME_00001830-RA No alias (at5g59850 : 244.0) Ribosomal protein S8 family protein;... 0.06 Orthogroups_2024-Update
PSME_00015526-RA No alias (at5g59850 : 244.0) Ribosomal protein S8 family protein;... 0.09 Orthogroups_2024-Update
Potri.001G118100 No alias ribosomal protein S15A 0.1 Orthogroups_2024-Update
Potri.010G208700 No alias Ribosomal protein S8 family protein 0.03 Orthogroups_2024-Update
Pp1s115_101V6 No alias 40s ribosomal protein s15a 0.1 Orthogroups_2024-Update
Pp1s1_304V6 No alias 40s ribosomal protein s15a 0.05 Orthogroups_2024-Update
Pp1s426_18V6 No alias 40s ribosomal protein s15a 0.12 Orthogroups_2024-Update
Pp1s45_88V6 No alias 40s ribosomal protein s15a 0.12 Orthogroups_2024-Update
Pp1s61_209V6 No alias 40s ribosomal protein s15a 0.05 Orthogroups_2024-Update
Seita.2G319400.1 No alias component *(uS8) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Seita.5G374600.1 No alias component *(uS8) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Seita.8G174900.1 No alias component *(uS8) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Sobic.003G012700.1 No alias component *(uS8) of small ribosomal-subunit (SSU) proteome 0.14 Orthogroups_2024-Update
Sobic.007G212600.1 No alias component *(uS8) of small ribosomal-subunit (SSU) proteome 0.13 Orthogroups_2024-Update
Sopen04g025860 No alias Ribosomal protein S8 0.11 Orthogroups_2024-Update
Sopen04g026010 No alias Ribosomal protein S8 0.04 Orthogroups_2024-Update
Sopen04g026020 No alias Ribosomal protein S8 0.2 Orthogroups_2024-Update
evm.model.contig_2045.5 No alias (at5g59850 : 190.0) Ribosomal protein S8 family protein;... 0.17 Orthogroups_2024-Update
evm.model.tig00000158.110 No alias (q9at34|rs15a_dauca : 210.0) 40S ribosomal protein S15a... 0.11 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR000630 Ribosomal_S8 7 130
No external refs found!