1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.B01077.1

Brara.B01077.1


Description : class-C-I small heat-shock-responsive protein


Gene families : OG_42_0000044 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000044_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B01077.1
Cluster HCAA Clusters: Cluster_261

Target Alias Description ECC score Gene Family Method Actions
At4g10250 No alias 22.0 kDa heat shock protein... 0.03 Orthogroups_2024-Update
At5g59720 No alias 18.1 kDa class I heat shock protein... 0.03 Orthogroups_2024-Update
Glyma.14G214800 No alias HSP20-like chaperones superfamily protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G020490.3 No alias class-C-II small heat-shock-responsive protein 0.03 Orthogroups_2024-Update
MA_102948g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
Mp7g06480.1 No alias 17.8 kDa class I heat shock protein OS=Arabidopsis... 0.02 Orthogroups_2024-Update
Potri.010G175200 No alias HSP20-like chaperones superfamily protein 0.03 Orthogroups_2024-Update
Sobic.004G092800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G086400.1 No alias class-ER small heat-shock-responsive protein 0.02 Orthogroups_2024-Update
Sopen03g041310 No alias Hsp20/alpha crystallin family 0.02 Orthogroups_2024-Update
evm.model.tig00020604.13 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004144 diacylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008235 metalloexopeptidase activity IEP Predicted GO
BP GO:0009262 deoxyribonucleotide metabolic process IEP Predicted GO
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Predicted GO
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Predicted GO
MF GO:0016840 carbon-nitrogen lyase activity IEP Predicted GO
MF GO:0016843 amine-lyase activity IEP Predicted GO
MF GO:0016844 strictosidine synthase activity IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030145 manganese ion binding IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
MF GO:0070006 metalloaminopeptidase activity IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002068 A-crystallin/Hsp20_dom 48 151
No external refs found!