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  5. Brara.B01161.1

Brara.B01161.1


Description : methylation reader *(ECT)


Gene families : OG_42_0000396 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000396_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B01161.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
A4A49_18428 No alias 30-kda cleavage and polyadenylation specificity factor 30 0.03 Orthogroups_2024-Update
Bradi1g05970 No alias evolutionarily conserved C-terminal region 2 0.05 Orthogroups_2024-Update
HORVU7Hr1G069070.2 No alias methylation reader *(ECT) 0.02 Orthogroups_2024-Update
Mp1g00140.1 No alias methylation reader (ECT) 0.02 Orthogroups_2024-Update
Potri.001G056100 No alias evolutionarily conserved C-terminal region 5 0.03 Orthogroups_2024-Update
Seita.2G046200.1 No alias methylation reader *(ECT) 0.05 Orthogroups_2024-Update
Sobic.001G060500.1 No alias methylation reader *(ECT) 0.02 Orthogroups_2024-Update
Sobic.002G047000.2 No alias methylation reader *(ECT) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007275 YTH_domain 323 461
No external refs found!