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  5. Brara.B01180.1

Brara.B01180.1


Description : cyclic nucleotide-gated cation channel *(CNGC)


Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B01180.1
Cluster HCAA Clusters: Cluster_47

Target Alias Description ECC score Gene Family Method Actions
Bradi4g37740 No alias cyclic nucleotide-gated channel 14 0.02 Orthogroups_2024-Update
Brara.B01472.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
GRMZM2G023037 No alias cyclic nucleotide gated channel 8 0.03 Orthogroups_2024-Update
Glyma.04G237400 No alias cyclic nucleotide gated channel 1 0.02 Orthogroups_2024-Update
Glyma.19G255300 No alias cyclic nucleotide gated channel 1 0.03 Orthogroups_2024-Update
Sobic.004G325400.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.02 Orthogroups_2024-Update
Sobic.010G068500.1 No alias cyclic nucleotide-gated cation channel *(CNGC) 0.03 Orthogroups_2024-Update
Solyc08g069140 No alias Cyclic nucleotide-gated channel (AHRD V3.3 *** A0A0K9PRG4_ZOSMR) 0.02 Orthogroups_2024-Update
Sopen08g022780 No alias Ion transport protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEA 16Dec
BP GO:0006811 ion transport IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0005049 nuclear export signal receptor activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
CC GO:0005886 plasma membrane IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0007021 tubulin complex assembly IEP Predicted GO
BP GO:0007023 post-chaperonin tubulin folding pathway IEP Predicted GO
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0008104 protein localization IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008915 lipid-A-disaccharide synthase activity IEP Predicted GO
BP GO:0009245 lipid A biosynthetic process IEP Predicted GO
BP GO:0009892 negative regulation of metabolic process IEP Predicted GO
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0010629 negative regulation of gene expression IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0033036 macromolecule localization IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0045184 establishment of protein localization IEP Predicted GO
BP GO:0046493 lipid A metabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0048487 beta-tubulin binding IEP Predicted GO
BP GO:0048519 negative regulation of biological process IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0071705 nitrogen compound transport IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0072546 ER membrane protein complex IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
MF GO:0140142 nucleocytoplasmic carrier activity IEP Predicted GO
BP GO:1901269 lipooligosaccharide metabolic process IEP Predicted GO
BP GO:1901271 lipooligosaccharide biosynthetic process IEP Predicted GO
CC GO:1902495 transmembrane transporter complex IEP Predicted GO
CC GO:1904949 ATPase complex IEP Predicted GO
CC GO:1990351 transporter complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000595 cNMP-bd_dom 523 611
IPR005821 Ion_trans_dom 101 427
No external refs found!