Brara.B01369.1


Description : component *(uL24c) of large plastid ribosomal-subunit proteome


Gene families : OG_42_0005677 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005677_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B01369.1
Cluster HCAA Clusters: Cluster_23

Target Alias Description ECC score Gene Family Method Actions
230291 No alias Translation protein SH3-like family protein 0.02 Orthogroups_2024-Update
A4A49_64410 No alias 50s ribosomal protein l24, chloroplastic 0.05 Orthogroups_2024-Update
Bradi1g33030 No alias Translation protein SH3-like family protein 0.07 Orthogroups_2024-Update
Cre16.g652550 No alias Translation protein SH3-like family protein 0.08 Orthogroups_2024-Update
Glyma.13G285600 No alias Translation protein SH3-like family protein 0.03 Orthogroups_2024-Update
HORVU7Hr1G101810.1 No alias component *(uL24c) of large plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Kfl00086_0080 kfl00086_0080_v1.1 (at5g54600 : 178.0) Translation protein SH3-like family... 0.03 Orthogroups_2024-Update
Mp3g07850.1 No alias component psRPL24 of large ribosomal subunit proteome 0.07 Orthogroups_2024-Update
Potri.001G415400 No alias Translation protein SH3-like family protein 0.06 Orthogroups_2024-Update
Pp1s24_126V6 No alias ribosomal protein l24 0.03 Orthogroups_2024-Update
Seita.4G255700.1 No alias component *(uL24c) of large plastid ribosomal-subunit proteome 0.03 Orthogroups_2024-Update
Sobic.010G233800.1 No alias component *(uL24c) of large plastid ribosomal-subunit proteome 0.1 Orthogroups_2024-Update
Solyc07g063960 No alias 50S ribosomal protein L24, chloroplastic (AHRD V3.3 ***... 0.08 Orthogroups_2024-Update
Sopen07g032100 No alias KOW motif 0.07 Orthogroups_2024-Update
evm.model.tig00000455.16 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003993 acid phosphatase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR005824 KOW 79 109
IPR003256 Ribosomal_L24 111 175
No external refs found!