Description : component *(uL24c) of large plastid ribosomal-subunit proteome
Gene families : OG_42_0005677 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005677_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.B01369.1 | |
Cluster | HCAA Clusters: Cluster_23 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
230291 | No alias | Translation protein SH3-like family protein | 0.02 | Orthogroups_2024-Update | |
A4A49_64410 | No alias | 50s ribosomal protein l24, chloroplastic | 0.05 | Orthogroups_2024-Update | |
Bradi1g33030 | No alias | Translation protein SH3-like family protein | 0.07 | Orthogroups_2024-Update | |
Cre16.g652550 | No alias | Translation protein SH3-like family protein | 0.08 | Orthogroups_2024-Update | |
Glyma.13G285600 | No alias | Translation protein SH3-like family protein | 0.03 | Orthogroups_2024-Update | |
HORVU7Hr1G101810.1 | No alias | component *(uL24c) of large plastid ribosomal-subunit proteome | 0.08 | Orthogroups_2024-Update | |
Kfl00086_0080 | kfl00086_0080_v1.1 | (at5g54600 : 178.0) Translation protein SH3-like family... | 0.03 | Orthogroups_2024-Update | |
Mp3g07850.1 | No alias | component psRPL24 of large ribosomal subunit proteome | 0.07 | Orthogroups_2024-Update | |
Potri.001G415400 | No alias | Translation protein SH3-like family protein | 0.06 | Orthogroups_2024-Update | |
Pp1s24_126V6 | No alias | ribosomal protein l24 | 0.03 | Orthogroups_2024-Update | |
Seita.4G255700.1 | No alias | component *(uL24c) of large plastid ribosomal-subunit proteome | 0.03 | Orthogroups_2024-Update | |
Sobic.010G233800.1 | No alias | component *(uL24c) of large plastid ribosomal-subunit proteome | 0.1 | Orthogroups_2024-Update | |
Solyc07g063960 | No alias | 50S ribosomal protein L24, chloroplastic (AHRD V3.3 ***... | 0.08 | Orthogroups_2024-Update | |
Sopen07g032100 | No alias | KOW motif | 0.07 | Orthogroups_2024-Update | |
evm.model.tig00000455.16 | No alias | no hits & (original description: no original description) | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | 16Dec |
CC | GO:0005840 | ribosome | IEA | 16Dec |
BP | GO:0006412 | translation | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003993 | acid phosphatase activity | IEP | Predicted GO |
MF | GO:0004525 | ribonuclease III activity | IEP | Predicted GO |
MF | GO:0004784 | superoxide dismutase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006801 | superoxide metabolic process | IEP | Predicted GO |
MF | GO:0008483 | transaminase activity | IEP | Predicted GO |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | Predicted GO |
MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Predicted GO |
MF | GO:0016866 | intramolecular transferase activity | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
MF | GO:0032296 | double-stranded RNA-specific ribonuclease activity | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
No external refs found! |