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  5. Brara.B01499.1

Brara.B01499.1


Description : LSU processome assembly factor *(NLE)


Gene families : OG_42_0006352 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006352_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B01499.1
Cluster HCAA Clusters: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
Bradi2g14270 No alias WD-40 repeat family protein / notchless protein, putative 0.04 Orthogroups_2024-Update
Potri.009G058000 No alias WD-40 repeat family protein / notchless protein, putative 0.03 Orthogroups_2024-Update
Sobic.009G258500.1 No alias LSU processome assembly factor *(NLE) 0.03 Orthogroups_2024-Update
Sopen03g031590 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update
evm.model.tig00000144.74 No alias (at5g52820 : 184.0) WD-40 repeat family protein /... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0034511 U3 snoRNA binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
InterPro domains Description Start Stop
IPR012972 NLE 15 72
IPR001680 WD40_repeat 352 389
IPR001680 WD40_repeat 234 268
IPR001680 WD40_repeat 101 138
IPR001680 WD40_repeat 439 473
IPR001680 WD40_repeat 394 430
IPR001680 WD40_repeat 191 228
IPR001680 WD40_repeat 273 345
IPR001680 WD40_repeat 143 180
No external refs found!