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  5. Brara.B01836.1

Brara.B01836.1


Description : SSU processome assembly factor *(UTP2/NOP14)


Gene families : OG_42_0005668 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005668_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B01836.1
Cluster HCAA Clusters: Cluster_181

Target Alias Description ECC score Gene Family Method Actions
At1g69070 No alias FUNCTIONS IN: molecular_function unknown; INVOLVED IN:... 0.05 Orthogroups_2024-Update
Bradi1g15110 No alias Function unknown 0.03 Orthogroups_2024-Update
Cre06.g260850 No alias Function unknown 0.16 Orthogroups_2024-Update
Glyma.02G003100 No alias Function unknown 0.04 Orthogroups_2024-Update
Glyma.10G005700 No alias Function unknown 0.04 Orthogroups_2024-Update
Kfl00103_0030 kfl00103_0030_v1.1 (at1g69070 : 178.0) FUNCTIONS IN: molecular_function... 0.03 Orthogroups_2024-Update
Mp8g07460.1 No alias SSU processome assembly factor (UTP2/NOP14) 0.06 Orthogroups_2024-Update
Potri.010G140100 No alias Function unknown 0.03 Orthogroups_2024-Update
Pp1s52_171V6 No alias chromosome 4 open reading frame isoform cra_a 0.06 Orthogroups_2024-Update
Seita.9G174300.1 No alias SSU processome assembly factor *(UTP2/NOP14) 0.14 Orthogroups_2024-Update
Sobic.001G173800.1 No alias SSU processome assembly factor *(UTP2/NOP14) 0.1 Orthogroups_2024-Update
Solyc05g011990 No alias Nucleolar 14 (AHRD V3.3 *** A0A0B0NLB8_GOSAR) 0.12 Orthogroups_2024-Update
evm.model.contig_2093.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00000571.5 No alias (at1g69070 : 115.0) FUNCTIONS IN: molecular_function... 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0032040 small-subunit processome IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003724 RNA helicase activity IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
BP GO:0030490 maturation of SSU-rRNA IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042255 ribosome assembly IEP Predicted GO
BP GO:0042256 mature ribosome assembly IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0070925 organelle assembly IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR007276 Nop14 25 882
No external refs found!