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  5. Brara.B01839.1

Brara.B01839.1


Description : SBP-type transcription factor


Gene families : OG_42_0000135 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000135_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B01839.1
Cluster HCAA Clusters: Cluster_368

Target Alias Description ECC score Gene Family Method Actions
A4A49_19850 No alias squamosa promoter-binding-like protein 16 0.02 Orthogroups_2024-Update
Glyma.02G121300 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 Orthogroups_2024-Update
Glyma.04G197100 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.02 Orthogroups_2024-Update
Glyma.17G080700 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.05 Orthogroups_2024-Update
HORVU5Hr1G073440.13 No alias SBP-type transcription factor 0.05 Orthogroups_2024-Update
LOC_Os09g31438 No alias OsSPL17 - SBP-box gene family member, expressed 0.02 Orthogroups_2024-Update
Pp1s34_37V6 No alias squamosa promoter-binding 0.02 Orthogroups_2024-Update
Sobic.002G247800.1 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.003G406600.1 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update
Sobic.010G254200.2 No alias SBP-type transcription factor 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR004333 SBP_dom 62 135
No external refs found!