Brara.B01882.1

Description : HD-ZIP I/II-type transcription factor

Gene families : OG_42_0000105 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000105_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.B01882.1
Cluster	HCAA Clusters: Cluster_136

Target	Alias	Description	ECC score	Gene Family Method
A4A49_24322	No alias	homeobox-leucine zipper protein athb-13	0.04	Orthogroups_2024-Update
Bradi1g71280	No alias	homeobox protein 21	0.02	Orthogroups_2024-Update
Bradi1g71930	No alias	homeobox 3	0.02	Orthogroups_2024-Update
Bradi1g73190	No alias	Homeobox-leucine zipper protein family	0.04	Orthogroups_2024-Update
Bradi3g38600	No alias	homeobox protein 5	0.02	Orthogroups_2024-Update
Brara.B00590.1	No alias	HD-ZIP I/II-type transcription factor	0.04	Orthogroups_2024-Update
Brara.E00112.1	No alias	HD-ZIP I/II-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G034113	No alias	homeobox 7	0.03	Orthogroups_2024-Update
GRMZM2G122076	No alias	homeobox 1	0.02	Orthogroups_2024-Update
Glyma.02G058900	No alias	homeobox protein 40	0.03	Orthogroups_2024-Update
Glyma.05G030000	No alias	homeobox 1	0.03	Orthogroups_2024-Update
HORVU4Hr1G078410.2	No alias	HD-ZIP I/II-type transcription factor	0.02	Orthogroups_2024-Update
Kfl00914_0040	kfl00914_0040_v1.1	no hits & (original description: no original description)	0.02	Orthogroups_2024-Update
LOC_Os03g10210	No alias	homeobox domain containing protein, expressed	0.03	Orthogroups_2024-Update
MA_128g0010	No alias	(at1g69780 : 137.0) Encodes a homeodomain leucine zipper...	0.03	Orthogroups_2024-Update
MA_169305g0010	No alias	(at2g22430 : 149.0) Encodes a homeodomain leucine zipper...	0.03	Orthogroups_2024-Update
MA_9241385g0010	No alias	(at5g15150 : 141.0) homeobox-containing gene with an...	0.03	Orthogroups_2024-Update
Potri.010G093400	No alias	Homeobox-leucine zipper protein family	0.04	Orthogroups_2024-Update
Potri.011G114500	No alias	homeobox protein 52	0.03	Orthogroups_2024-Update
Pp1s28_46V6	No alias	homeobox-leucine zipper protein hat7	0.03	Orthogroups_2024-Update
Pp1s31_96V6	No alias	dna-binding protein	0.04	Orthogroups_2024-Update
Pp1s57_194V6	No alias	No description available	0.02	Orthogroups_2024-Update
Seita.1G306100.1	No alias	HD-ZIP I/II-type transcription factor	0.03	Orthogroups_2024-Update
Seita.2G284000.1	No alias	HD-ZIP I/II-type transcription factor	0.02	Orthogroups_2024-Update
Seita.7G184600.1	No alias	HD-ZIP I/II-type transcription factor	0.02	Orthogroups_2024-Update
Sobic.004G251300.1	No alias	HD-ZIP I/II-type transcription factor	0.03	Orthogroups_2024-Update
Solyc03g082550	No alias	Homeobox leucine zipper (AHRD V3.3 - J7FWS7_ROSRU)	0.03	Orthogroups_2024-Update
Solyc04g074700	No alias	LES17306 homeodomain protein	0.03	Orthogroups_2024-Update
Solyc09g008810	No alias	Homeobox leucine zipper protein (AHRD V3.3 *** A0A072U315_MEDTR)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000776	kinetochore	IEP	Predicted GO
MF	GO:0003905	alkylbase DNA N-glycosylase activity	IEP	Predicted GO
BP	GO:0006259	DNA metabolic process	IEP	Predicted GO
BP	GO:0006281	DNA repair	IEP	Predicted GO
BP	GO:0006284	base-excision repair	IEP	Predicted GO
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Predicted GO
MF	GO:0008716	D-alanine-D-alanine ligase activity	IEP	Predicted GO
MF	GO:0008725	DNA-3-methyladenine glycosylase activity	IEP	Predicted GO
MF	GO:0016799	hydrolase activity, hydrolyzing N-glycosyl compounds	IEP	Predicted GO
MF	GO:0016881	acid-amino acid ligase activity	IEP	Predicted GO
MF	GO:0019104	DNA N-glycosylase activity	IEP	Predicted GO
CC	GO:0031262	Ndc80 complex	IEP	Predicted GO
BP	GO:0033554	cellular response to stress	IEP	Predicted GO
MF	GO:0043733	DNA-3-methylbase glycosylase activity	IEP	Predicted GO
BP	GO:0051716	cellular response to stimulus	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001356	Homeobox_dom	78	131
IPR003106	Leu_zip_homeo	133	175

External Links

No external refs found!

Brara.B01882.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation