Brara.B01915.1

Description : KNOX-type transcription factor

Gene families : OG_42_0000234 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000234_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.B01915.1
Cluster	HCAA Clusters: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method
A4A49_11478	No alias	homeobox protein knotted-1-like 6	0.03	Orthogroups_2024-Update
A4A49_16490	No alias	homeobox protein knotted-1-like 1	0.01	Orthogroups_2024-Update
A4A49_16694	No alias	homeotic protein knotted-1	0.03	Orthogroups_2024-Update
A4A49_22921	No alias	homeobox protein knotted-1-like let6	0.04	Orthogroups_2024-Update
At4g08150	No alias	Homeobox protein knotted-1-like 1...	0.03	Orthogroups_2024-Update
Brara.C02557.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Brara.F02723.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I01203.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
GRMZM2G452178	No alias	KNOTTED-like from Arabidopsis thaliana	0.03	Orthogroups_2024-Update
Glyma.02G036900	No alias	KNOTTED1-like homeobox gene 6	0.03	Orthogroups_2024-Update
Glyma.04G049500	No alias	KNOTTED-like from Arabidopsis thaliana	0.04	Orthogroups_2024-Update
Glyma.04G185100	No alias	KNOTTED1-like homeobox gene 6	0.05	Orthogroups_2024-Update
Glyma.15G111900	No alias	KNOX/ELK homeobox transcription factor	0.03	Orthogroups_2024-Update
Glyma.15G257800	No alias	KNOTTED1-like homeobox gene 6	0.03	Orthogroups_2024-Update
LOC_Os03g03164	No alias	homeobox protein knotted-1, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os03g47016	No alias	homeobox protein knotted-1-like 10, putative, expressed	0.03	Orthogroups_2024-Update
LOC_Os03g47042	No alias	homeobox protein rough sheath 1, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os03g51710	No alias	homeobox protein knotted-1, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os05g03884	No alias	homeobox protein knotted-1-like 6, putative, expressed	0.03	Orthogroups_2024-Update
MA_10428500g0010	No alias	(o04136\|knap3_maldo : 399.0) Homeobox protein...	0.03	Orthogroups_2024-Update
PSME_00033424-RA	No alias	(at4g08150 : 121.0) A member of class I knotted1-like...	0.03	Orthogroups_2024-Update
PSME_00033425-RA	No alias	(o04135\|knap2_maldo : 176.0) Homeobox protein...	0.04	Orthogroups_2024-Update
PSME_00035379-RA	No alias	(o04135\|knap2_maldo : 179.0) Homeobox protein...	0.02	Orthogroups_2024-Update
PSME_00035381-RA	No alias	(p46609\|osh1_orysa : 118.0) Homeobox protein OSH1 -...	0.03	Orthogroups_2024-Update
Potri.004G004700	No alias	KNOX/ELK homeobox transcription factor	0.03	Orthogroups_2024-Update
Potri.005G017200	No alias	KNOTTED1-like homeobox gene 6	0.04	Orthogroups_2024-Update
Potri.011G011100	No alias	KNOX/ELK homeobox transcription factor	0.03	Orthogroups_2024-Update
Potri.012G087100	No alias	KNOTTED1-like homeobox gene 6	0.03	Orthogroups_2024-Update
Sobic.001G106000.2	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.001G106200.1	No alias	KNOX-type transcription factor	0.03	Orthogroups_2024-Update
Sobic.002G023900.1	No alias	KNOX-type transcription factor	0.04	Orthogroups_2024-Update
Solyc02g081120	No alias	class 1 knotted-like homeodomain protein	0.03	Orthogroups_2024-Update
Solyc05g005090	No alias	Knotted-1 homeobox protein (AHRD V3.3 *** R9R650_9FABA)	0.04	Orthogroups_2024-Update
Sopen12g005430	No alias	KNOX2 domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Predicted GO
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Predicted GO
MF	GO:0004146	dihydrofolate reductase activity	IEP	Predicted GO
MF	GO:0004867	serine-type endopeptidase inhibitor activity	IEP	Predicted GO
CC	GO:0005576	extracellular region	IEP	Predicted GO
BP	GO:0006760	folic acid-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006811	ion transport	IEP	Predicted GO
BP	GO:0006812	cation transport	IEP	Predicted GO
BP	GO:0006820	anion transport	IEP	Predicted GO
BP	GO:0006835	dicarboxylic acid transport	IEP	Predicted GO
MF	GO:0008146	sulfotransferase activity	IEP	Predicted GO
MF	GO:0008200	ion channel inhibitor activity	IEP	Predicted GO
MF	GO:0008324	cation transmembrane transporter activity	IEP	Predicted GO
MF	GO:0008519	ammonium transmembrane transporter activity	IEP	Predicted GO
BP	GO:0009396	folic acid-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0009611	response to wounding	IEP	Predicted GO
BP	GO:0015696	ammonium transport	IEP	Predicted GO
BP	GO:0015711	organic anion transport	IEP	Predicted GO
BP	GO:0015740	C4-dicarboxylate transport	IEP	Predicted GO
BP	GO:0015743	malate transport	IEP	Predicted GO
BP	GO:0015849	organic acid transport	IEP	Predicted GO
MF	GO:0016247	channel regulator activity	IEP	Predicted GO
MF	GO:0016248	channel inhibitor activity	IEP	Predicted GO
MF	GO:0016491	oxidoreductase activity	IEP	Predicted GO
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Predicted GO
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0017080	sodium channel regulator activity	IEP	Predicted GO
MF	GO:0019871	sodium channel inhibitor activity	IEP	Predicted GO
BP	GO:0030001	metal ion transport	IEP	Predicted GO
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	Predicted GO
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0046653	tetrahydrofolate metabolic process	IEP	Predicted GO
BP	GO:0046654	tetrahydrofolate biosynthetic process	IEP	Predicted GO
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0046942	carboxylic acid transport	IEP	Predicted GO
MF	GO:0048037	cofactor binding	IEP	Predicted GO
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	Predicted GO
BP	GO:0072488	ammonium transmembrane transport	IEP	Predicted GO
MF	GO:0099106	ion channel regulator activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR005540	KNOX1	83	124
IPR008422	Homeobox_KN_domain	264	303
IPR005539	ELK_dom	224	245
IPR005541	KNOX2	136	182

External Links

No external refs found!

Brara.B01915.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation