- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : RING-H2-class ATL-subclass E3 ubiquitin ligase
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Brassica rapa: Brara.B02009.1 | |
| Cluster | HCAA Clusters: Cluster_90 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| A4A49_08432 | No alias | ring-h2 finger protein atl70 | 0.03 | Orthogroups_2024-Update | |
| A4A49_24557 | No alias | ring-h2 finger protein atl73 | 0.03 | Orthogroups_2024-Update | |
| Bradi1g46750 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi2g22650 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi2g49152 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi3g46030 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi4g32634 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Brara.A00287.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Brara.C01887.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Brara.I04147.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Brara.J02480.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Glyma.07G245400 | No alias | TOXICOS EN LEVADURA 2 | 0.04 | Orthogroups_2024-Update | |
| Glyma.10G156500 | No alias | RING/U-box superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Glyma.10G289100 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.11G143350 | No alias | TOXICOS EN LEVADURA 2 | 0.03 | Orthogroups_2024-Update | |
| Glyma.15G157400 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.16G030900 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| HORVU5Hr1G079910.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| LOC_Os06g11450 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os06g34870 | No alias | Zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os08g37760 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.03 | Orthogroups_2024-Update | |
| LOC_Os12g42530 | No alias | expressed protein | 0.03 | Orthogroups_2024-Update | |
| MA_10436208g0010 | No alias | (at1g72200 : 100.0) RING/U-box superfamily protein;... | 0.03 | Orthogroups_2024-Update | |
| MA_308999g0010 | No alias | (at1g72310 : 80.9) Encodes a putative RING-H2 zinc... | 0.03 | Orthogroups_2024-Update | |
| MA_9143538g0010 | No alias | no hits & (original description: no original description) | 0.04 | Orthogroups_2024-Update | |
| Mp3g00390.1 | No alias | RING-H2-class E3 ligase | 0.02 | Orthogroups_2024-Update | |
| PSME_00034763-RA | No alias | (at5g05280 : 85.1) RING/U-box superfamily protein;... | 0.04 | Orthogroups_2024-Update | |
| Potri.010G010500 | No alias | TOXICOS EN LEVADURA 2 | 0.03 | Orthogroups_2024-Update | |
| Seita.2G087800.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.3G374600.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| Seita.7G110600.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G147301.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.004G181400.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.03 | Orthogroups_2024-Update | |
| Solyc02g067700 | No alias | RING/U-box superfamily protein, putative (AHRD V3.3 ***... | 0.03 | Orthogroups_2024-Update | |
| Solyc11g006450 | No alias | RING/U-box superfamily protein (AHRD V3.3 *** A0A061FQW5_THECC) | 0.03 | Orthogroups_2024-Update | |
| Solyc11g073170 | No alias | LOW QUALITY:RING/U-box superfamily protein, putative... | 0.03 | Orthogroups_2024-Update | |
| Sopen02g031720 | No alias | Ring finger domain | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| CC | GO:0000439 | transcription factor TFIIH core complex | IEP | Predicted GO |
| CC | GO:0005667 | transcription factor complex | IEP | Predicted GO |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Predicted GO |
| BP | GO:0006367 | transcription initiation from RNA polymerase II promoter | IEP | Predicted GO |
| BP | GO:0006413 | translational initiation | IEP | Predicted GO |
| MF | GO:0008092 | cytoskeletal protein binding | IEP | Predicted GO |
| CC | GO:0044798 | nuclear transcription factor complex | IEP | Predicted GO |
| CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 175 | 218 |
| No external refs found! |