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  5. Brara.B02021.1

Brara.B02021.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B02021.1
Cluster HCAA Clusters: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
A4A49_08432 No alias ring-h2 finger protein atl70 0.03 Orthogroups_2024-Update
A4A49_10724 No alias ring-h2 finger protein atl33 0.03 Orthogroups_2024-Update
A4A49_29196 No alias ring-h2 finger protein atl72 0.03 Orthogroups_2024-Update
A4A49_36505 No alias e3 ubiquitin-protein ligase atl6 0.02 Orthogroups_2024-Update
A4A49_40065 No alias ring-h2 finger protein atl70 0.02 Orthogroups_2024-Update
At1g35330 No alias RING/U-box superfamily protein [Source:TAIR;Acc:AT1G35330] 0.03 Orthogroups_2024-Update
At1g49200 No alias RING-H2 finger protein ATL75... 0.03 Orthogroups_2024-Update
At1g49210 No alias E3 ubiquitin-protein ligase ATL76... 0.02 Orthogroups_2024-Update
At2g42350 No alias RING-H2 finger protein ATL40... 0.03 Orthogroups_2024-Update
At3g10910 No alias RING-H2 finger protein ATL72... 0.03 Orthogroups_2024-Update
At3g19140 No alias Putative RING-H2 finger protein ATL62... 0.06 Orthogroups_2024-Update
At4g09130 No alias Putative RING-H2 finger protein ATL37... 0.03 Orthogroups_2024-Update
At4g15975 No alias RING/U-box superfamily protein [Source:TAIR;Acc:AT4G15975] 0.03 Orthogroups_2024-Update
At4g40070 No alias RING-H2 finger protein ATL32... 0.03 Orthogroups_2024-Update
At5g06490 No alias Putative RING-H2 finger protein ATL71... 0.04 Orthogroups_2024-Update
At5g41450 No alias RING/U-box superfamily protein... 0.04 Orthogroups_2024-Update
Bradi1g60390 No alias hypoxia-responsive family protein / zinc finger... 0.04 Orthogroups_2024-Update
Bradi2g22650 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g60770 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g37430 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi4g44454 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.04 Orthogroups_2024-Update
Brara.A02911.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.B02994.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.B03540.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.C01887.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.E02489.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.E02690.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Brara.F00385.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.F02864.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
Brara.G01336.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.H00897.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.I04330.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.J02480.1 No alias Unknown function 0.05 Orthogroups_2024-Update
GRMZM2G004519 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.02G194400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G062800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G078800 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.08G070100 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.08G271100 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.10G289100 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.13G292600 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.15G157400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G010400 No alias hypoxia-responsive family protein / zinc finger... 0.03 Orthogroups_2024-Update
Glyma.20G099800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU0Hr1G021450.9 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU6Hr1G029910.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU6Hr1G050490.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU7Hr1G080020.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
HORVU7Hr1G120910.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os02g35329 No alias RING-H2 finger protein ATL3F, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os03g44636 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g39940 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os09g29310 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g42530 No alias expressed protein 0.03 Orthogroups_2024-Update
MA_10431388g0020 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_10432957g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_10436208g0010 No alias (at1g72200 : 100.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_10436650g0010 No alias (at1g72310 : 126.0) Encodes a putative RING-H2 zinc... 0.02 Orthogroups_2024-Update
MA_26001g0020 No alias (at1g72310 : 117.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
MA_2679g0010 No alias (at3g16720 : 111.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
MA_308999g0010 No alias (at1g72310 : 80.9) Encodes a putative RING-H2 zinc... 0.05 Orthogroups_2024-Update
MA_37578g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_569551g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_634100g0010 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update
MA_81046g0010 No alias (at1g49230 : 127.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
MA_9143538g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
PSME_00003016-RA No alias (at1g72200 : 114.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00003022-RA No alias (at1g72200 : 164.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00051307-RA No alias (at3g18773 : 100.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.001G400600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G073300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G036800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.005G244800 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.007G057300 No alias RING-H2 finger A3A 0.04 Orthogroups_2024-Update
Potri.008G219200 No alias TOXICOS EN LEVADURA 2 0.03 Orthogroups_2024-Update
Potri.010G206300 No alias TOXICOS EN LEVADURA 2 0.04 Orthogroups_2024-Update
Potri.012G003900 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.013G073500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.019G091400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Pp1s41_270V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.02 Orthogroups_2024-Update
Seita.1G017900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.1G197600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.2G238400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G181200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G181300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.004G187800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G301300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.004G305000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.009G205400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.010G071000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
Solyc01g088440 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc08g076830 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Solyc11g005300 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G49230.1) 0.05 Orthogroups_2024-Update
Solyc12g087860 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Sopen01g032660 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen01g048080 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen11g001290 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000444 MIS12/MIND type complex IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0008134 transcription factor binding IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0017025 TBP-class protein binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 119 162
No external refs found!