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  5. Brara.B02062.1

Brara.B02062.1


Description : auxin transporter *(PIN) & auxin efflux transporter *(PIN)


Gene families : OG_42_0000235 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000235_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B02062.1
Cluster HCAA Clusters: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
234325 No alias Auxin efflux carrier family protein 0.02 Orthogroups_2024-Update
99301 No alias Auxin efflux carrier family protein 0.02 Orthogroups_2024-Update
A4A49_35848 No alias hypothetical protein 0.04 Orthogroups_2024-Update
PSME_00020548-RA No alias (at5g57090 : 686.0) Encodes an auxin efflux carrier that... 0.02 Orthogroups_2024-Update
Potri.008G129400 No alias Auxin efflux carrier family protein 0.03 Orthogroups_2024-Update
Potri.016G035300 No alias Auxin efflux carrier family protein 0.03 Orthogroups_2024-Update
Solyc05g008060 No alias SlPIN4 0.03 Orthogroups_2024-Update
Sopen05g003900 No alias Membrane transport protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0010181 FMN binding IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
InterPro domains Description Start Stop
IPR004776 Mem_trans 9 611
No external refs found!