1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.B02333.1

Brara.B02333.1


Description : component *(uL13c) of large plastid ribosomal-subunit proteome


Gene families : OG_42_0005662 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005662_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B02333.1
Cluster HCAA Clusters: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
7665 No alias Ribosomal protein L13 family protein 0.03 Orthogroups_2024-Update
A4A49_20292 No alias 50s ribosomal protein l13, chloroplastic 0.04 Orthogroups_2024-Update
Bradi2g49850 No alias Ribosomal protein L13 family protein 0.12 Orthogroups_2024-Update
Cre06.g264350 No alias Ribosomal protein L13 family protein 0.08 Orthogroups_2024-Update
GRMZM2G043212 No alias Ribosomal protein L13 family protein 0.04 Orthogroups_2024-Update
HORVU3Hr1G071530.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.08 Orthogroups_2024-Update
Kfl00255_0080 kfl00255_0080_v1.1 (at1g78630 : 240.0) embryo defective 1473 (emb1473);... 0.05 Orthogroups_2024-Update
LOC_Os01g54540 No alias ribosomal protein L13, putative, expressed 0.03 Orthogroups_2024-Update
MA_10433400g0010 No alias (at1g78630 : 164.0) embryo defective 1473 (emb1473);... 0.05 Orthogroups_2024-Update
Pp1s365_36V6 No alias ribosomal protein l13 0.03 Orthogroups_2024-Update
Seita.5G318200.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.07 Orthogroups_2024-Update
Sobic.003G295800.1 No alias component *(uL13c) of large plastid ribosomal-subunit proteome 0.09 Orthogroups_2024-Update
Solyc12g014390 No alias Non-LTR retroelement reverse transcriptase-like protein,... 0.05 Orthogroups_2024-Update
Sopen07g030470 No alias Ribosomal protein L13 0.02 Orthogroups_2024-Update
Sopen12g006160 No alias Ribosomal protein L13 0.06 Orthogroups_2024-Update
evm.model.tig00020912.24 No alias (at1g78630 : 99.8) embryo defective 1473 (emb1473);... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004109 coproporphyrinogen oxidase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0004784 superoxide dismutase activity IEP Predicted GO
MF GO:0004797 thymidine kinase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004820 glycine-tRNA ligase activity IEP Predicted GO
MF GO:0004832 valine-tRNA ligase activity IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006082 organic acid metabolic process IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006426 glycyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006438 valyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
CC GO:0017053 transcriptional repressor complex IEP Predicted GO
MF GO:0019136 deoxynucleoside kinase activity IEP Predicted GO
MF GO:0019205 nucleobase-containing compound kinase activity IEP Predicted GO
MF GO:0019206 nucleoside kinase activity IEP Predicted GO
BP GO:0019752 carboxylic acid metabolic process IEP Predicted GO
MF GO:0030554 adenyl nucleotide binding IEP Predicted GO
MF GO:0032559 adenyl ribonucleotide binding IEP Predicted GO
BP GO:0033013 tetrapyrrole metabolic process IEP Predicted GO
BP GO:0033014 tetrapyrrole biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0043436 oxoacid metabolic process IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005822 Ribosomal_L13 105 222
No external refs found!