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  5. Brara.B02393.1

Brara.B02393.1


Description : deadenylase component *(CAF1) of mRNA deadenylation CCR4-NOT complex


Gene families : OG_42_0001501 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B02393.1
Cluster HCAA Clusters: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
A4A49_32883 No alias putative ccr4-associated factor 1-like 6 0.03 Orthogroups_2024-Update
Brara.C00446.1 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 Orthogroups_2024-Update
PSME_00056023-RA No alias (at2g32070 : 347.0) Polynucleotidyl transferase,... 0.03 Orthogroups_2024-Update
Potri.006G262500 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.04 Orthogroups_2024-Update
Potri.018G020900 No alias Polynucleotidyl transferase, ribonuclease H-like... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005778 peroxisomal membrane IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006464 cellular protein modification process IEP Predicted GO
BP GO:0006468 protein phosphorylation IEP Predicted GO
BP GO:0006793 phosphorus metabolic process IEP Predicted GO
BP GO:0006796 phosphate-containing compound metabolic process IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
BP GO:0016310 phosphorylation IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Predicted GO
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
CC GO:0031903 microbody membrane IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0036211 protein modification process IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
MF GO:0051287 NAD binding IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
CC GO:0070449 elongin complex IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 15 137
No external refs found!