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  5. Brara.B02853.1

Brara.B02853.1


Description : plant-specific ALOG-type transcription factor


Gene families : OG_42_0000294 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000294_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B02853.1
Cluster HCAA Clusters: Cluster_292

Target Alias Description ECC score Gene Family Method Actions
GRMZM2G027302 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update
LOC_Os05g28040 No alias DUF640 domain containing protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g39500 No alias DUF640 domain containing protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00040596-RA No alias (at2g31160 : 184.0) LIGHT SENSITIVE HYPOCOTYLS 3 (LSH3);... 0.05 Orthogroups_2024-Update
Pp1s73_217V6 No alias No description available 0.02 Orthogroups_2024-Update
Sopen02g018650 No alias Protein of unknown function (DUF640) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
CC GO:0005778 peroxisomal membrane IEP Predicted GO
BP GO:0006013 mannose metabolic process IEP Predicted GO
BP GO:0006405 RNA export from nucleus IEP Predicted GO
BP GO:0006406 mRNA export from nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0007031 peroxisome organization IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
CC GO:0031903 microbody membrane IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
BP GO:0050657 nucleic acid transport IEP Predicted GO
BP GO:0050658 RNA transport IEP Predicted GO
BP GO:0051028 mRNA transport IEP Predicted GO
BP GO:0051168 nuclear export IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051236 establishment of RNA localization IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
InterPro domains Description Start Stop
IPR006936 ALOG_dom 23 144
No external refs found!