Brara.B03044.1

Description : HD-ZIP I/II-type transcription factor

Gene families : OG_42_0000184 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.B03044.1
Cluster	HCAA Clusters: Cluster_135

Target	Alias	Description	ECC score	Gene Family Method
At4g17460	No alias	Homeobox-leucine zipper protein HAT1...	0.04	Orthogroups_2024-Update
At5g47370	No alias	Homeobox-leucine zipper protein HAT2...	0.03	Orthogroups_2024-Update
Brara.A00117.1	No alias	HD-ZIP I/II-type transcription factor	0.04	Orthogroups_2024-Update
LOC_Os06g48290	No alias	homeobox associated leucine zipper, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os09g27450	No alias	homeobox associated leucine zipper, putative, expressed	0.03	Orthogroups_2024-Update
PSME_00028375-RA	No alias	(at5g06710 : 210.0) Homeobox-leucine zipper protein.;...	0.03	Orthogroups_2024-Update
Seita.1G201700.1	No alias	HD-ZIP I/II-type transcription factor	0.02	Orthogroups_2024-Update
Solyc05g008050	No alias	Homeobox associated leucine zipper protein (AHRD V3.3...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000149	SNARE binding	IEP	Predicted GO
MF	GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity	IEP	Predicted GO
MF	GO:0003885	D-arabinono-1,4-lactone oxidase activity	IEP	Predicted GO
CC	GO:0005667	transcription factor complex	IEP	Predicted GO
CC	GO:0005672	transcription factor TFIIA complex	IEP	Predicted GO
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Predicted GO
BP	GO:0006487	protein N-linked glycosylation	IEP	Predicted GO
MF	GO:0008375	acetylglucosaminyltransferase activity	IEP	Predicted GO
MF	GO:0015276	ligand-gated ion channel activity	IEP	Predicted GO
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Predicted GO
MF	GO:0019905	syntaxin binding	IEP	Predicted GO
MF	GO:0022834	ligand-gated channel activity	IEP	Predicted GO
MF	GO:0022836	gated channel activity	IEP	Predicted GO
MF	GO:0022839	ion gated channel activity	IEP	Predicted GO
CC	GO:0044798	nuclear transcription factor complex	IEP	Predicted GO
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Predicted GO
MF	GO:0140103	catalytic activity, acting on a glycoprotein	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003106	Leu_zip_homeo	120	154
IPR001356	Homeobox_dom	64	118

External Links

No external refs found!

Brara.B03044.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation