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  5. Brara.B03202.1

Brara.B03202.1


Description : RAV/NGATHA-type transcription factor & AP2-RAV-type transcription factor *(EDF)


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B03202.1
Cluster HCAA Clusters: Cluster_165

Target Alias Description ECC score Gene Family Method Actions
At3g11580 No alias AP2/B3-like transcriptional factor family protein... 0.05 Orthogroups_2024-Update
Brara.A03401.1 No alias RAV/NGATHA-type transcription factor 0.07 Orthogroups_2024-Update
Brara.C03374.1 No alias RAV/NGATHA-type transcription factor 0.04 Orthogroups_2024-Update
Brara.E00098.1 No alias RAV/NGATHA-type transcription factor 0.04 Orthogroups_2024-Update
Brara.J00079.1 No alias RAV/NGATHA-type transcription factor 0.04 Orthogroups_2024-Update
Glyma.10G076100 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
Glyma.10G204400 No alias AP2/B3 transcription factor family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G082670.6 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.02 Orthogroups_2024-Update
Mp2g22250.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Orthogroups_2024-Update
PSME_00032471-RA No alias (at1g68840 : 300.0) Rav2 is part of a complex that has... 0.03 Orthogroups_2024-Update
Seita.1G273900.1 No alias RAV/NGATHA-type transcription factor 0.04 Orthogroups_2024-Update
Seita.6G064600.1 No alias RAV/NGATHA-type transcription factor 0.04 Orthogroups_2024-Update
Sobic.004G280500.1 No alias RAV/NGATHA-type transcription factor 0.02 Orthogroups_2024-Update
Solyc04g007000 No alias AP2/B3 transcription factor family protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc05g009790 No alias AP2/B3 transcription factor family protein (AHRD V3.3... 0.02 Orthogroups_2024-Update
Solyc10g083210 No alias B3 domain-containing protein family (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen08g004530 No alias B3 DNA binding domain 0.03 Orthogroups_2024-Update
Sopen10g032690 No alias B3 DNA binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0008037 cell recognition IEP Predicted GO
BP GO:0008610 lipid biosynthetic process IEP Predicted GO
BP GO:0022414 reproductive process IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
BP GO:0048544 recognition of pollen IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 193 297
IPR001471 AP2/ERF_dom 65 113
No external refs found!