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  5. Brara.B03326.1

Brara.B03326.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B03326.1
Cluster HCAA Clusters: Cluster_104

Target Alias Description ECC score Gene Family Method Actions
123936 No alias ATP binding cassette subfamily B4 0.02 Orthogroups_2024-Update
Brara.D00408.1 No alias subfamily ABCB transporter 0.04 Orthogroups_2024-Update
Brara.G00386.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
GRMZM2G125424 No alias ATP binding cassette subfamily B19 0.04 Orthogroups_2024-Update
GRMZM5G833207 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
Glyma.08G342600 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
LOC_Os01g74470 No alias ABC transporter, ATP-binding protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10436810g0020 No alias (at3g28345 : 992.0) ABC transporter family protein;... 0.02 Orthogroups_2024-Update
MA_934204g0010 No alias (at3g28345 : 1352.0) ABC transporter family protein;... 0.05 Orthogroups_2024-Update
Potri.001G139700 No alias P-glycoprotein 2 0.03 Orthogroups_2024-Update
Potri.010G003000 No alias ATP binding cassette subfamily B4 0.04 Orthogroups_2024-Update
Potri.011G133800 No alias P-glycoprotein 18 0.03 Orthogroups_2024-Update
Potri.014G113500 No alias P-glycoprotein 21 0.02 Orthogroups_2024-Update
Potri.018G087100 No alias ABC transporter family protein 0.02 Orthogroups_2024-Update
Sobic.004G274600.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Sopen09g003060 No alias ABC transporter transmembrane region 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR011527 ABC1_TM_dom 36 303
IPR011527 ABC1_TM_dom 678 946
IPR003439 ABC_transporter-like 1019 1168
IPR003439 ABC_transporter-like 379 526
No external refs found!