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  5. Brara.B03479.1

Brara.B03479.1


Description : EC_3.2 glycosylase


Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B03479.1
Cluster HCAA Clusters: Cluster_232

Target Alias Description ECC score Gene Family Method Actions
A4A49_27803 No alias putative polygalacturonase 0.03 Orthogroups_2024-Update
HORVU5Hr1G117470.3 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
LOC_Os03g03350 No alias polygalacturonase, putative, expressed 0.02 Orthogroups_2024-Update
Potri.003G139100 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G008600 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Sopen07g021760 No alias Glycosyl hydrolases family 28 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA 16Dec
BP GO:0005975 carbohydrate metabolic process IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005739 mitochondrion IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 137 416
No external refs found!