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  5. Brara.B03508.1

Brara.B03508.1


Description : GARP subgroup PHL transcription factor & transcription factor *(PHR1)


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B03508.1
Cluster HCAA Clusters: Cluster_194

Target Alias Description ECC score Gene Family Method Actions
149357 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
47303 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi1g31837 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g21880 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g36710 No alias Homeodomain-like superfamily protein 0.01 Orthogroups_2024-Update
Bradi3g52500 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi5g20520 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Brara.I02613.1 No alias KANADI-type transcription factor 0.04 Orthogroups_2024-Update
Brara.J01739.1 No alias GARP subgroup PHL transcription factor 0.06 Orthogroups_2024-Update
GRMZM2G056400 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G069525 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G143600 No alias myb-like HTH transcriptional regulator family protein 0.03 Orthogroups_2024-Update
Glyma.11G213700 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G152200 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os08g06370 No alias MYB family transcription factor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os08g25820 No alias myb-like DNA-binding domain containing protein, expressed 0.03 Orthogroups_2024-Update
Mp4g08700.1 No alias G2-like GARP transcription factor 0.02 Orthogroups_2024-Update
PSME_00036264-RA No alias (at5g29000 : 213.0) Homeodomain-like superfamily... 0.03 Orthogroups_2024-Update
Potri.016G117000 No alias myb-like HTH transcriptional regulator family protein 0.03 Orthogroups_2024-Update
Potri.017G137600 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s12_158V6 No alias MUJ8.2; myb family transcription factor [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Pp1s2_312V6 No alias dna binding 0.02 Orthogroups_2024-Update
Pp1s73_118V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.2G436900.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Seita.3G199300.1 No alias GARP subgroup PHL transcription factor 0.02 Orthogroups_2024-Update
Seita.8G019800.1 No alias transcription factor *(CLAUSA) 0.03 Orthogroups_2024-Update
Seita.9G419000.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Sobic.004G270600.1 No alias GARP subgroup PHL transcription factor 0.02 Orthogroups_2024-Update
Sobic.007G132000.1 No alias KANADI-type transcription factor 0.02 Orthogroups_2024-Update
Sopen03g002160 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0004559 alpha-mannosidase activity IEP Predicted GO
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
BP GO:0006810 transport IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
MF GO:0015923 mannosidase activity IEP Predicted GO
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Predicted GO
CC GO:0016020 membrane IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0046873 metal ion transmembrane transporter activity IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051179 localization IEP Predicted GO
BP GO:0051234 establishment of localization IEP Predicted GO
BP GO:0055085 transmembrane transport IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 275 326
IPR025756 Myb_CC_LHEQLE 362 407
No external refs found!