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  5. Brara.B03608.1

Brara.B03608.1


Description : Unknown function


Gene families : OG_42_0000022 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000022_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B03608.1
Cluster HCAA Clusters: Cluster_219

Target Alias Description ECC score Gene Family Method Actions
227274 No alias Function unknown 0.02 Orthogroups_2024-Update
229747 No alias germin-like protein 5 0.02 Orthogroups_2024-Update
At1g18970 No alias Germin-like protein subfamily T member 1... 0.04 Orthogroups_2024-Update
At1g74820 No alias Germin-like protein subfamily T member 3... 0.03 Orthogroups_2024-Update
At3g05930 No alias Germin-like protein subfamily 2 member 3... 0.03 Orthogroups_2024-Update
Bradi5g21910 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
LOC_Os08g35760 No alias Cupin domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_579918g0010 No alias (q9s8p4|rhre_pea : 172.0) Rhicadhesin receptor precursor... 0.03 Orthogroups_2024-Update
Mp8g18120.1 No alias Putative germin-like protein 3-2 OS=Oryza sativa subsp.... 0.03 Orthogroups_2024-Update
Potri.009G140400 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
Potri.011G163800 No alias RmlC-like cupins superfamily protein 0.03 Orthogroups_2024-Update
Sobic.007G066500.1 No alias Unknown function 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000930 gamma-tubulin complex IEP Predicted GO
CC GO:0000931 gamma-tubulin large complex IEP Predicted GO
MF GO:0003729 mRNA binding IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP Predicted GO
CC GO:0005685 U1 snRNP IEP Predicted GO
BP GO:0006376 mRNA splice site selection IEP Predicted GO
BP GO:0007049 cell cycle IEP Predicted GO
BP GO:0015936 coenzyme A metabolic process IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
BP GO:0031503 protein-containing complex localization IEP Predicted GO
BP GO:0033566 gamma-tubulin complex localization IEP Predicted GO
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Predicted GO
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034629 cellular protein-containing complex localization IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044430 cytoskeletal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044450 microtubule organizing center part IEP Predicted GO
MF GO:0046983 protein dimerization activity IEP Predicted GO
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
BP GO:0051321 meiotic cell cycle IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
InterPro domains Description Start Stop
IPR006045 Cupin_1 59 204
No external refs found!