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  5. Brara.B03627.1

Brara.B03627.1


Description : E3 ubiquitin ligase *(CHY)


Gene families : OG_42_0001040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001040_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Brassica rapa: Brara.B03627.1
Cluster HCAA Clusters: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
Bradi1g75350 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.02 Orthogroups_2024-Update
Brara.I04356.1 No alias E3 ubiquitin ligase *(CHY) 0.03 Orthogroups_2024-Update
Glyma.11G192900 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G038120.1 No alias E3 ubiquitin ligase *(CHY) 0.02 Orthogroups_2024-Update
Potri.006G245400 No alias CHY-type/CTCHY-type/RING-type Zinc finger protein 0.03 Orthogroups_2024-Update
Sopen06g035890 No alias Zinc-ribbon 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
BP GO:0050896 response to stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR039512 RCHY1_zinc-ribbon 243 301
IPR001841 Znf_RING 195 238
IPR008913 Znf_CHY 60 141
No external refs found!