Brara.B03705.1


Description : component *(uS17) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0002289 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002289_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B03705.1
Cluster HCAA Clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
268639 No alias Nucleic acid-binding, OB-fold-like protein 0.03 Orthogroups_2024-Update
Bradi3g48600 No alias Nucleic acid-binding, OB-fold-like protein 0.05 Orthogroups_2024-Update
Bradi5g21630 No alias Nucleic acid-binding, OB-fold-like protein 0.06 Orthogroups_2024-Update
Brara.A02200.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Cre12.g514500 No alias Nucleic acid-binding, OB-fold-like protein 0.04 Orthogroups_2024-Update
GRMZM2G019325 No alias ribosomal protein S11-beta 0.08 Orthogroups_2024-Update
GRMZM2G044800 No alias ribosomal protein S11-beta 0.03 Orthogroups_2024-Update
Glyma.09G094200 No alias ribosomal protein S11-beta 0.03 Orthogroups_2024-Update
Glyma.13G165200 No alias ribosomal protein S11-beta 0.07 Orthogroups_2024-Update
HORVU2Hr1G099230.8 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
HORVU6Hr1G056610.7 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.02 Orthogroups_2024-Update
Kfl00435_0080 kfl00435_0080_v1.1 (p17093|rs11_soybn : 243.0) 40S ribosomal protein S11 -... 0.06 Orthogroups_2024-Update
LOC_Os04g52361 No alias ribosomal protein S17, putative, expressed 0.03 Orthogroups_2024-Update
MA_19350g0010 No alias (at3g48930 : 247.0) embryo defective 1080 (EMB1080);... 0.03 Orthogroups_2024-Update
Mp4g23360.1 No alias component RPS11 of SSU proteome 0.02 Orthogroups_2024-Update
Mp6g10500.1 No alias component RPS11 of SSU proteome 0.02 Orthogroups_2024-Update
Potri.014G053300 No alias ribosomal protein S11-beta 0.07 Orthogroups_2024-Update
Pp1s21_269V6 No alias 40s ribosomal protein s11 0.05 Orthogroups_2024-Update
Pp1s30_89V6 No alias 40s ribosomal protein s11 0.04 Orthogroups_2024-Update
Seita.1G231100.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.07 Orthogroups_2024-Update
Seita.7G234800.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Sobic.004G213200.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Sobic.006G138100.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
Sobic.006G213000.1 No alias component *(uS17) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Solyc06g073790 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.07 Orthogroups_2024-Update
Solyc06g073800 No alias 40s ribosomal protein S11 (AHRD V3.3 *** K7XKQ3_SOLTU) 0.09 Orthogroups_2024-Update
Sopen06g030190 No alias Ribosomal protein S17 0.09 Orthogroups_2024-Update
Sopen12g021180 No alias Ribosomal protein S17 0.05 Orthogroups_2024-Update
evm.model.contig_3727.5 No alias (at4g30800 : 197.0) Nucleic acid-binding, OB-fold-like... 0.09 Orthogroups_2024-Update
evm.model.tig00000551.22 No alias (p17093|rs11_soybn : 211.0) 40S ribosomal protein S11 -... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003883 CTP synthase activity IEP Predicted GO
MF GO:0004146 dihydrofolate reductase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006220 pyrimidine nucleotide metabolic process IEP Predicted GO
BP GO:0006221 pyrimidine nucleotide biosynthetic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006760 folic acid-containing compound metabolic process IEP Predicted GO
BP GO:0009396 folic acid-containing compound biosynthetic process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
CC GO:0019867 outer membrane IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0031090 organelle membrane IEP Predicted GO
CC GO:0031966 mitochondrial membrane IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
BP GO:0042558 pteridine-containing compound metabolic process IEP Predicted GO
BP GO:0042559 pteridine-containing compound biosynthetic process IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044281 small molecule metabolic process IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
BP GO:0046653 tetrahydrofolate metabolic process IEP Predicted GO
BP GO:0046654 tetrahydrofolate biosynthetic process IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
CC GO:0098588 bounding membrane of organelle IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR032440 Ribosomal_S11_N 4 72
IPR000266 Ribosomal_S17/S11 74 142
No external refs found!