Brara.B03768.1

Description : MADS/AGL-type transcription factor

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.B03768.1
Cluster	HCAA Clusters: Cluster_400

Target	Alias	Description	ECC score	Gene Family Method
A4A49_16645	No alias	agamous-like mads-box protein agl11	0.02	Orthogroups_2024-Update
At1g26310	No alias	Transcription factor CAULIFLOWER...	0.03	Orthogroups_2024-Update
At1g69120	No alias	AP1 [Source:UniProtKB/TrEMBL;Acc:A0A178W846]	0.03	Orthogroups_2024-Update
At3g57230	No alias	Agamous-like MADS-box protein AGL16...	0.03	Orthogroups_2024-Update
At5g23260	No alias	K-box region and MADS-box transcription factor family...	0.04	Orthogroups_2024-Update
At5g62165	No alias	MADS-box protein AGL42 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIS1]	0.03	Orthogroups_2024-Update
Brara.J01588.1	No alias	component *(PISTILLATA) of AP3-PISTILLATA organ-identity...	0.03	Orthogroups_2024-Update
Glyma.07G081300	No alias	AGAMOUS-like 6	0.03	Orthogroups_2024-Update
Glyma.09G283800	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.13G034100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.14G183800	No alias	AGAMOUS-like 16	0.03	Orthogroups_2024-Update
Glyma.17G132700	No alias	AGAMOUS-like 19	0.02	Orthogroups_2024-Update
HORVU6Hr1G002330.8	No alias	Unknown function	0.04	Orthogroups_2024-Update
PSME_00023534-RA	No alias	(at2g22610 : 141.0) Di-glucose binding protein with...	0.03	Orthogroups_2024-Update
PSME_00036249-RA	No alias	(at4g11880 : 99.8) AGL12, AGL14, and AGL17 are all...	0.02	Orthogroups_2024-Update
Potri.005G182200	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
Seita.4G268200.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Seita.6G223400.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.04	Orthogroups_2024-Update
Solyc05g015730	No alias	No description available	0.03	Orthogroups_2024-Update
Sopen03g033910	No alias	K-box region	0.03	Orthogroups_2024-Update
Sopen08g021160	No alias	SRF-type transcription factor (DNA-binding and...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Predicted GO
BP	GO:0006334	nucleosome assembly	IEP	Predicted GO
BP	GO:0018208	peptidyl-proline modification	IEP	Predicted GO
BP	GO:0034728	nucleosome organization	IEP	Predicted GO
BP	GO:0065004	protein-DNA complex assembly	IEP	Predicted GO
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	84	175
IPR002100	TF_MADSbox	10	57

External Links

No external refs found!

Brara.B03768.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation