1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.B03874.1

Brara.B03874.1


Description : E3 ubiquitin ligase *(RGLG) & E3 ubiquitin ligase *(RGLG)


Gene families : OG_42_0000469 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000469_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.B03874.1
Cluster HCAA Clusters: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
Glyma.19G078600 No alias RING domain ligase1 0.03 Orthogroups_2024-Update
HORVU5Hr1G091920.4 No alias E3 ubiquitin ligase *(RGLG) & E3 ubiquitin ligase *(RGLG) 0.04 Orthogroups_2024-Update
HORVU7Hr1G090830.1 No alias E3 ubiquitin ligase *(RGLG) & E3 ubiquitin ligase *(RGLG) 0.04 Orthogroups_2024-Update
PSME_00007424-RA No alias (at5g14420 : 142.0) RING domain ligase2 (RGLG2);... 0.03 Orthogroups_2024-Update
Solyc05g053870 No alias E3 ubiquitin-protein ligase RGLG2 (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
InterPro domains Description Start Stop
IPR010734 Copine 60 272
No external refs found!