Brara.B03942.1

Description : TGA-type transcription factor

Gene families : OG_42_0000327 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000327_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Brassica rapa: Brara.B03942.1
Cluster	HCAA Clusters: Cluster_273

Target	Alias	Description	ECC score	Gene Family Method
A4A49_26608	No alias	transcription factor hbp-1b(c1)	0.03	Orthogroups_2024-Update
A4A49_28673	No alias	transcription factor tga1	0.03	Orthogroups_2024-Update
A4A49_33268	No alias	tgacg-sequence-specific dna-binding protein tga-2.1	0.03	Orthogroups_2024-Update
Bradi1g17210	No alias	TGACG motif-binding factor 6	0.02	Orthogroups_2024-Update
Glyma.13G085100	No alias	bZIP transcription factor family protein	0.03	Orthogroups_2024-Update
Glyma.18G020900	No alias	bZIP transcription factor family protein	0.04	Orthogroups_2024-Update
LOC_Os01g59350	No alias	transcription factor, putative, expressed	0.04	Orthogroups_2024-Update
LOC_Os03g20310	No alias	transcription factor HBP-1b, putative, expressed	0.03	Orthogroups_2024-Update
MA_130907g0010	No alias	(at1g08320 : 421.0) bZIP transcription factor family...	0.03	Orthogroups_2024-Update
PSME_00018083-RA	No alias	(at1g08320 : 379.0) bZIP transcription factor family...	0.04	Orthogroups_2024-Update
Potri.001G029800	No alias	TGACG motif-binding factor 6	0.03	Orthogroups_2024-Update
Potri.003G194600	No alias	TGACG motif-binding factor 6	0.03	Orthogroups_2024-Update
Seita.6G232500.1	No alias	TGA-type transcription factor	0.03	Orthogroups_2024-Update
Sopen04g028640	No alias	Seed dormancy control	0.02	Orthogroups_2024-Update
Sopen12g029540	No alias	Seed dormancy control	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	16Dec
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0005672	transcription factor TFIIA complex	IEP	Predicted GO
BP	GO:0006367	transcription initiation from RNA polymerase II promoter	IEP	Predicted GO
CC	GO:0019898	extrinsic component of membrane	IEP	Predicted GO
CC	GO:0044798	nuclear transcription factor complex	IEP	Predicted GO
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR025422	TGA_domain	172	247
IPR004827	bZIP	84	114

External Links

No external refs found!

Brara.B03942.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation