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  5. Brara.C00028.1

Brara.C00028.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000680 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000680_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00028.1
Cluster HCAA Clusters: Cluster_107

Target Alias Description ECC score Gene Family Method Actions
Brara.F01768.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.G00871.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Glyma.18G063500 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G037550.5 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
PSME_00027883-RA No alias (at5g01520 : 323.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
PSME_00043699-RA No alias (at3g47160 : 298.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Potri.010G052700 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.010G053000 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.012G093300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G089800 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Potri.016G115300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Pp1s47_230V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.02 Orthogroups_2024-Update
Sopen05g009270 No alias Zinc finger, C3HC4 type (RING finger) 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0007034 vacuolar transport IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO

No InterPro domains available for this sequence

No external refs found!