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  5. Brara.C00106.1

Brara.C00106.1


Description : platform ATPase CDC48


Gene families : OG_42_0000328 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00106.1
Cluster HCAA Clusters: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
145748 No alias ATPase, AAA-type, CDC48 protein 0.02 Orthogroups_2024-Update
Kfl00069_0370 kfl00069_0370_v1.1 (at3g56690 : 315.0) encodes a protein similar to ATPases... 0.01 Orthogroups_2024-Update
Seita.9G239600.1 No alias platform ATPase CDC48 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
MF GO:0016887 ATPase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Predicted GO
MF GO:0004329 formate-tetrahydrofolate ligase activity IEP Predicted GO
MF GO:0004649 poly(ADP-ribose) glycohydrolase activity IEP Predicted GO
CC GO:0005778 peroxisomal membrane IEP Predicted GO
BP GO:0006282 regulation of DNA repair IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0010035 response to inorganic substance IEP Predicted GO
BP GO:0010167 response to nitrate IEP Predicted GO
BP GO:0015698 inorganic anion transport IEP Predicted GO
BP GO:0015706 nitrate transport IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
CC GO:0031903 microbody membrane IEP Predicted GO
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Predicted GO
BP GO:0034227 tRNA thio-modification IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
BP GO:0051052 regulation of DNA metabolic process IEP Predicted GO
BP GO:0080134 regulation of response to stress IEP Predicted GO
BP GO:0080135 regulation of cellular response to stress IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
BP GO:1901698 response to nitrogen compound IEP Predicted GO
BP GO:1901700 response to oxygen-containing compound IEP Predicted GO
BP GO:2001020 regulation of response to DNA damage stimulus IEP Predicted GO
InterPro domains Description Start Stop
IPR004201 Cdc48_dom2 131 194
IPR003959 ATPase_AAA_core 244 373
IPR003959 ATPase_AAA_core 517 650
IPR003338 CDC4_N-term_subdom 29 110
No external refs found!