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  5. Brara.C00134.1

Brara.C00134.1


Description : component *(eS28) of small ribosomal-subunit (SSU) proteome


Gene families : OG_42_0002582 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002582_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00134.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
170205 No alias Nucleic acid-binding, OB-fold-like protein 0.03 Orthogroups_2024-Update
At3g10090 No alias 40S ribosomal protein S28-1... 0.05 Orthogroups_2024-Update
At5g03850 No alias 40S ribosomal protein S28-1... 0.07 Orthogroups_2024-Update
At5g64140 No alias RPS28 [Source:UniProtKB/TrEMBL;Acc:A0A178UA91] 0.08 Orthogroups_2024-Update
Bradi3g00500 No alias Nucleic acid-binding, OB-fold-like protein 0.12 Orthogroups_2024-Update
Bradi4g13890 No alias Nucleic acid-binding, OB-fold-like protein 0.06 Orthogroups_2024-Update
Bradi4g13910 No alias Nucleic acid-binding, OB-fold-like protein 0.03 Orthogroups_2024-Update
Brara.F02295.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.17 Orthogroups_2024-Update
Cre12.g510450 No alias Nucleic acid-binding, OB-fold-like protein 0.25 Orthogroups_2024-Update
GRMZM2G124143 No alias Nucleic acid-binding, OB-fold-like protein 0.12 Orthogroups_2024-Update
GRMZM2G455828 No alias Nucleic acid-binding, OB-fold-like protein 0.14 Orthogroups_2024-Update
HORVU3Hr1G115820.3 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Kfl00237_0050 kfl00237_0050_v1.1 no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
LOC_Os10g27174 No alias 40S ribosomal protein S28, putative, expressed 0.03 Orthogroups_2024-Update
Mp3g15160.1 No alias component RPS28 of SSU proteome 0.1 Orthogroups_2024-Update
Potri.008G013200 No alias ribosomal protein S28 0.14 Orthogroups_2024-Update
Potri.010G245400 No alias ribosomal protein S28 0.04 Orthogroups_2024-Update
Pp1s21_362V6 No alias 40s ribosomal protein s28 0.32 Orthogroups_2024-Update
Pp1s279_27V6 No alias 40s ribosomal protein s28 0.26 Orthogroups_2024-Update
Pp1s313_15V6 No alias 40s ribosomal protein s28 0.17 Orthogroups_2024-Update
Pp1s34_107V6 No alias 40s ribosomal protein s28 0.19 Orthogroups_2024-Update
Sobic.001G402050.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.27 Orthogroups_2024-Update
Sobic.001G493001.1 No alias component *(eS28) of small ribosomal-subunit (SSU) proteome 0.24 Orthogroups_2024-Update
Solyc02g021400 No alias 40S ribosomal protein S28 (AHRD V3.3 *-* W9SEX7_9ROSA) 0.17 Orthogroups_2024-Update
Solyc10g078630 No alias 40S ribosomal protein S28 (AHRD V3.3 *-* W9SEX7_9ROSA) 0.15 Orthogroups_2024-Update
evm.model.tig00000194.27 No alias (p46302|rs28_maize : 101.0) 40S ribosomal protein S28 -... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0001181 RNA polymerase I general transcription initiation factor activity IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
MF GO:0004814 arginine-tRNA ligase activity IEP Predicted GO
BP GO:0006361 transcription initiation from RNA polymerase I promoter IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0006420 arginyl-tRNA aminoacylation IEP Predicted GO
CC GO:0015934 large ribosomal subunit IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
CC GO:0044391 ribosomal subunit IEP Predicted GO
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
MF GO:0140223 general transcription initiation factor activity IEP Predicted GO
InterPro domains Description Start Stop
IPR000289 Ribosomal_S28e 4 63
No external refs found!