Description : Unknown function
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.C00179.1 | |
Cluster | HCAA Clusters: Cluster_390 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
182822 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.04 | Orthogroups_2024-Update | |
At1g03510 | No alias | Putative pentatricopeptide repeat-containing protein... | 0.03 | Orthogroups_2024-Update | |
At1g20230 | No alias | Pentatricopeptide repeat-containing protein At1g20230... | 0.04 | Orthogroups_2024-Update | |
At1g77170 | No alias | Pentatricopeptide repeat-containing protein At1g77170,... | 0.03 | Orthogroups_2024-Update | |
Bradi2g06450 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi2g32290 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi3g51740 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G123014 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G158839 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.05G244400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.07G068600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.06 | Orthogroups_2024-Update | |
Glyma.08G117400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.10G230100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.15G059000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G058590.1 | No alias | RNA editing factor *(MEF1) | 0.03 | Orthogroups_2024-Update | |
LOC_Os07g09370 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_99849g0010 | No alias | (at4g02750 : 581.0) Tetratricopeptide repeat (TPR)-like... | 0.03 | Orthogroups_2024-Update | |
PSME_00048766-RA | No alias | (at4g02750 : 577.0) Tetratricopeptide repeat (TPR)-like... | 0.04 | Orthogroups_2024-Update | |
PSME_00049918-RA | No alias | (at4g18750 : 525.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
Potri.002G239600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.003G031600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.004G124400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Seita.1G077500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.1G215700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G001800.1 | No alias | RNA editing factor *(ELI1) | 0.02 | Orthogroups_2024-Update | |
Seita.7G139500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.001G069300.2 | No alias | RNA editing factor *(DEK36) | 0.02 | Orthogroups_2024-Update | |
Sobic.001G212200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.002G007000.2 | No alias | RNA editing factor *(ELI1) | 0.02 | Orthogroups_2024-Update | |
Sobic.004G217900.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.006G146400.4 | No alias | RNA editing factor *(MEF12) | 0.02 | Orthogroups_2024-Update | |
Sobic.007G208400.1 | No alias | RNA editing factor *(REME1) | 0.02 | Orthogroups_2024-Update | |
Solyc11g008940 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000049 | tRNA binding | IEP | Predicted GO |
BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0004045 | aminoacyl-tRNA hydrolase activity | IEP | Predicted GO |
MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Predicted GO |
MF | GO:0004252 | serine-type endopeptidase activity | IEP | Predicted GO |
BP | GO:0009451 | RNA modification | IEP | Predicted GO |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | Predicted GO |
MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | Predicted GO |
MF | GO:0016866 | intramolecular transferase activity | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
MF | GO:0042586 | peptide deformylase activity | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 387 | 415 |
IPR002885 | Pentatricopeptide_repeat | 91 | 117 |
IPR002885 | Pentatricopeptide_repeat | 221 | 245 |
IPR002885 | Pentatricopeptide_repeat | 193 | 218 |
IPR002885 | Pentatricopeptide_repeat | 319 | 367 |
IPR002885 | Pentatricopeptide_repeat | 118 | 163 |
IPR032867 | DYW_dom | 535 | 627 |
No external refs found! |