Brara.C00179.1


Description : Unknown function


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00179.1
Cluster HCAA Clusters: Cluster_390

Target Alias Description ECC score Gene Family Method Actions
182822 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Orthogroups_2024-Update
At1g03510 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Orthogroups_2024-Update
At1g20230 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.04 Orthogroups_2024-Update
At1g77170 No alias Pentatricopeptide repeat-containing protein At1g77170,... 0.03 Orthogroups_2024-Update
Bradi2g06450 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Bradi2g32290 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g51740 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G123014 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G158839 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.05G244400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G068600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
Glyma.08G117400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G230100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.15G059000 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G058590.1 No alias RNA editing factor *(MEF1) 0.03 Orthogroups_2024-Update
LOC_Os07g09370 No alias pentatricopeptide, putative, expressed 0.02 Orthogroups_2024-Update
MA_99849g0010 No alias (at4g02750 : 581.0) Tetratricopeptide repeat (TPR)-like... 0.03 Orthogroups_2024-Update
PSME_00048766-RA No alias (at4g02750 : 577.0) Tetratricopeptide repeat (TPR)-like... 0.04 Orthogroups_2024-Update
PSME_00049918-RA No alias (at4g18750 : 525.0) Encodes a pentatricopeptide (PPR)... 0.03 Orthogroups_2024-Update
Potri.002G239600 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.003G031600 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Orthogroups_2024-Update
Potri.004G124400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G077500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.1G215700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.2G001800.1 No alias RNA editing factor *(ELI1) 0.02 Orthogroups_2024-Update
Seita.7G139500.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.001G069300.2 No alias RNA editing factor *(DEK36) 0.02 Orthogroups_2024-Update
Sobic.001G212200.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.002G007000.2 No alias RNA editing factor *(ELI1) 0.02 Orthogroups_2024-Update
Sobic.004G217900.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.006G146400.4 No alias RNA editing factor *(MEF12) 0.02 Orthogroups_2024-Update
Sobic.007G208400.1 No alias RNA editing factor *(REME1) 0.02 Orthogroups_2024-Update
Solyc11g008940 No alias Pentatricopeptide repeat-containing protein (AHRD V3.3... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA 16Dec
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004176 ATP-dependent peptidase activity IEP Predicted GO
MF GO:0004252 serine-type endopeptidase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
MF GO:0042586 peptide deformylase activity IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 387 415
IPR002885 Pentatricopeptide_repeat 91 117
IPR002885 Pentatricopeptide_repeat 221 245
IPR002885 Pentatricopeptide_repeat 193 218
IPR002885 Pentatricopeptide_repeat 319 367
IPR002885 Pentatricopeptide_repeat 118 163
IPR032867 DYW_dom 535 627
No external refs found!