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  5. Brara.C00399.1

Brara.C00399.1


Description : component *(NRPB4) of RNA polymerase II complex


Gene families : OG_42_0002503 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002503_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00399.1
Cluster HCAA Clusters: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
HORVU0Hr1G040320.1 No alias component *(NRPB4) of RNA polymerase II complex 0.03 Orthogroups_2024-Update
Potri.016G003200 No alias RNA polymerase II, Rpb4, core protein 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0006352 DNA-templated transcription, initiation IEA 16Dec
CC GO:0030880 RNA polymerase complex IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Predicted GO
MF GO:0004089 carbonate dehydratase activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005778 peroxisomal membrane IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006012 galactose metabolic process IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
MF GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
CC GO:0031903 microbody membrane IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
CC GO:0090575 RNA polymerase II transcription factor complex IEP Predicted GO
InterPro domains Description Start Stop
IPR005574 RPB4/RPC9 23 134
No external refs found!