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  5. Brara.C00432.1

Brara.C00432.1


Description : regulatory E3 ubiquitin ligase (MREL/JUL) of microtubule dynamics & RING-H2-class CTL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000181 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000181_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00432.1
Cluster HCAA Clusters: Cluster_330

Target Alias Description ECC score Gene Family Method Actions
Bradi1g33750 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.G02303.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
GRMZM2G061663 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G096211 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G122223 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G165044 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G234300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G158500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU3Hr1G018800.2 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Pp1s254_59V6 No alias zinc finger (c3hc4-type ring finger) family protein 0.02 Orthogroups_2024-Update
Sobic.003G250400.1 No alias RING-H2-class CTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Solyc05g008840 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G73760.1) 0.03 Orthogroups_2024-Update
Solyc08g006460 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT5G10650.2) 0.03 Orthogroups_2024-Update
Sopen12g028740 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Predicted GO
CC GO:0005681 spliceosomal complex IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0009605 response to external stimulus IEP Predicted GO
BP GO:0009606 tropism IEP Predicted GO
BP GO:0010274 hydrotropism IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 443 485
No external refs found!