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  5. Brara.C00446.1

Brara.C00446.1


Description : deadenylase component *(CAF1) of mRNA deadenylation CCR4-NOT complex


Gene families : OG_42_0001501 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00446.1
Cluster HCAA Clusters: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
Brara.B02393.1 No alias deadenylase component *(CAF1) of mRNA deadenylation... 0.03 Orthogroups_2024-Update
LOC_Os08g34170 No alias CAF1 family ribonuclease containing protein, putative, expressed 0.02 Orthogroups_2024-Update
PSME_00046274-RA No alias (at2g32070 : 422.0) Polynucleotidyl transferase,... 0.02 Orthogroups_2024-Update
Sobic.006G273800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sopen11g020580 No alias CAF1 family ribonuclease 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003873 6-phosphofructo-2-kinase activity IEP Predicted GO
BP GO:0006000 fructose metabolic process IEP Predicted GO
BP GO:0006801 superoxide metabolic process IEP Predicted GO
BP GO:0007062 sister chromatid cohesion IEP Predicted GO
BP GO:0007064 mitotic sister chromatid cohesion IEP Predicted GO
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP Predicted GO
MF GO:0008443 phosphofructokinase activity IEP Predicted GO
MF GO:0019200 carbohydrate kinase activity IEP Predicted GO
BP GO:0022402 cell cycle process IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042546 cell wall biogenesis IEP Predicted GO
BP GO:0072593 reactive oxygen species metabolic process IEP Predicted GO
BP GO:1903047 mitotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR006941 RNase_CAF1 15 137
No external refs found!