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  5. Brara.C00582.1

Brara.C00582.1


Description : MADS/AGL-type transcription factor


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00582.1
Cluster HCAA Clusters: Cluster_204

Target Alias Description ECC score Gene Family Method Actions
A4A49_10096 No alias mads-box protein soc1 0.03 Orthogroups_2024-Update
A4A49_15806 No alias developmental protein sepallata 1 0.03 Orthogroups_2024-Update
A4A49_27621 No alias agamous-like mads-box protein agl9 0.05 Orthogroups_2024-Update
A4A49_29655 No alias floral homeotic protein globosa 0.04 Orthogroups_2024-Update
At1g77980 No alias Agamous-like MADS-box protein AGL66... 0.04 Orthogroups_2024-Update
At2g24840 No alias Agamous-like MADS-box protein AGL61... 0.03 Orthogroups_2024-Update
At3g66656 No alias AGAMOUS-like 91 [Source:UniProtKB/TrEMBL;Acc:Q9C836] 0.03 Orthogroups_2024-Update
Bradi2g30530 No alias AGAMOUS-like 23 0.02 Orthogroups_2024-Update
Bradi3g46920 No alias AGAMOUS-like 16 0.03 Orthogroups_2024-Update
Bradi4g06867 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Bradi4g34680 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Bradi4g39420 No alias AGAMOUS-like 62 0.02 Orthogroups_2024-Update
Brara.A00398.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Brara.B01837.1 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.04 Orthogroups_2024-Update
Brara.D02091.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.E02241.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Brara.J00749.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Brara.K00198.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G032339 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
GRMZM2G171365 No alias AGAMOUS-like 20 0.02 Orthogroups_2024-Update
GRMZM2G171650 No alias AGAMOUS-like 79 0.03 Orthogroups_2024-Update
Glyma.05G050700 No alias AGAMOUS-like 19 0.05 Orthogroups_2024-Update
Glyma.05G163200 No alias K-box region and MADS-box transcription factor family protein 0.02 Orthogroups_2024-Update
Glyma.13G052700 No alias K-box region and MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Glyma.14G183800 No alias AGAMOUS-like 16 0.03 Orthogroups_2024-Update
Glyma.20G136700 No alias AGAMOUS-like 62 0.03 Orthogroups_2024-Update
HORVU5Hr1G110470.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
HORVU7Hr1G025700.6 No alias regulatory protein *(SEPALLATA) of floral meristem... 0.03 Orthogroups_2024-Update
LOC_Os08g38590 No alias OsMADS62 - MADS-box family gene with MIKC* type-box, expressed 0.03 Orthogroups_2024-Update
LOC_Os10g39130 No alias OsMADS56 - MADS-box family gene with MIKCc type-box, expressed 0.02 Orthogroups_2024-Update
Potri.001G112400 No alias AGAMOUS-like 19 0.03 Orthogroups_2024-Update
Potri.002G079000 No alias K-box region and MADS-box transcription factor family protein 0.05 Orthogroups_2024-Update
Potri.003G119700 No alias AGAMOUS-like 19 0.04 Orthogroups_2024-Update
Potri.004G002400 No alias AGAMOUS-like 62 0.04 Orthogroups_2024-Update
Potri.004G064300 No alias K-box region and MADS-box transcription factor family protein 0.04 Orthogroups_2024-Update
Potri.007G087500 No alias AGAMOUS-like 66 0.03 Orthogroups_2024-Update
Potri.014G074100 No alias AGAMOUS-like 6 0.03 Orthogroups_2024-Update
Pp1s209_130V6 No alias mads-box transcription factor 0.02 Orthogroups_2024-Update
Seita.6G156800.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Seita.6G194800.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Solyc01g060300 No alias damaged DNA binding 2 (AHRD V3.3 --* AT5G58760.2) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
MF GO:0046983 protein dimerization activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006450 regulation of translational fidelity IEP Predicted GO
MF GO:0009916 alternative oxidase activity IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Predicted GO
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002487 TF_Kbox 86 172
IPR002100 TF_MADSbox 10 57
No external refs found!