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  5. Brara.C00776.1

Brara.C00776.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00776.1
Cluster HCAA Clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
A4A49_18667 No alias ring-h2 finger protein atl18 0.03 Orthogroups_2024-Update
A4A49_22293 No alias ring-h2 finger protein atl13 0.03 Orthogroups_2024-Update
A4A49_29196 No alias ring-h2 finger protein atl72 0.03 Orthogroups_2024-Update
Bradi4g42620 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.A03822.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.E01533.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os01g11520 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g52210 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_19072g0010 No alias (at5g17600 : 137.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Potri.005G071300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G017900.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.8G248300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G063750.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.008G152100.2 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Solyc12g087840 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0005096 GTPase activator activity IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
BP GO:0006914 autophagy IEP Predicted GO
BP GO:0019915 lipid storage IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030120 vesicle coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
CC GO:0044433 cytoplasmic vesicle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0061919 process utilizing autophagic mechanism IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 134 177
No external refs found!