Description : component *(uS9) of small ribosomal-subunit (SSU) proteome
Gene families : OG_42_0002098 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002098_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Brassica rapa: Brara.C00820.1 | |
Cluster | HCAA Clusters: Cluster_254 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
138369 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.21 | Orthogroups_2024-Update | |
A4A49_19998 | No alias | 40s ribosomal protein s16 | 0.2 | Orthogroups_2024-Update | |
A4A49_23464 | No alias | 40s ribosomal protein s16 | 0.11 | Orthogroups_2024-Update | |
A4A49_46097 | No alias | 40s ribosomal protein s16 | 0.17 | Orthogroups_2024-Update | |
Bradi4g43980 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Brara.A03778.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.12 | Orthogroups_2024-Update | |
Cre13.g573351 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.12 | Orthogroups_2024-Update | |
GRMZM2G353103 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.11 | Orthogroups_2024-Update | |
GRMZM2G377797 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.06 | Orthogroups_2024-Update | |
GRMZM2G427014 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.11 | Orthogroups_2024-Update | |
Glyma.02G103600 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.13 | Orthogroups_2024-Update | |
Glyma.05G241200 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.12 | Orthogroups_2024-Update | |
Glyma.08G048200 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.24 | Orthogroups_2024-Update | |
HORVU4Hr1G023530.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.12 | Orthogroups_2024-Update | |
HORVU4Hr1G023570.2 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.14 | Orthogroups_2024-Update | |
HORVU5Hr1G045620.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.1 | Orthogroups_2024-Update | |
Kfl00461_0050 | kfl00461_0050_v1.1 | (p46293|rs16_goshi : 254.0) 40S ribosomal protein S16 -... | 0.08 | Orthogroups_2024-Update | |
LOC_Os12g03090 | No alias | ribosomal protein, putative, expressed | 0.09 | Orthogroups_2024-Update | |
Mp1g07720.1 | No alias | component RPS16 of SSU proteome | 0.04 | Orthogroups_2024-Update | |
Mp1g14290.1 | No alias | component RPS16 of SSU proteome | 0.23 | Orthogroups_2024-Update | |
Potri.001G304700 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.16 | Orthogroups_2024-Update | |
Potri.008G150000 | No alias | Ribosomal protein S5 domain 2-like superfamily protein | 0.05 | Orthogroups_2024-Update | |
Pp1s17_377V6 | No alias | 40s ribosomal protein s16 | 0.25 | Orthogroups_2024-Update | |
Pp1s199_17V6 | No alias | 40s ribosomal protein s16 | 0.12 | Orthogroups_2024-Update | |
Pp1s225_61V6 | No alias | 40s ribosomal protein s16 | 0.03 | Orthogroups_2024-Update | |
Pp1s228_28V6 | No alias | 40s ribosomal protein s16 | 0.07 | Orthogroups_2024-Update | |
Pp1s290_44V6 | No alias | 40s ribosomal protein s16 | 0.04 | Orthogroups_2024-Update | |
Seita.7G306900.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.23 | Orthogroups_2024-Update | |
Sobic.005G019700.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.28 | Orthogroups_2024-Update | |
Sobic.008G021100.1 | No alias | component *(uS9) of small ribosomal-subunit (SSU) proteome | 0.12 | Orthogroups_2024-Update | |
Solyc01g068530 | No alias | Ribosomal protein S16 (AHRD V3.3 *** A9P8S1_POPTR) | 0.1 | Orthogroups_2024-Update | |
Solyc04g026100 | No alias | Ribosomal protein S16 (AHRD V3.3 *** A9P8S1_POPTR) | 0.14 | Orthogroups_2024-Update | |
Solyc05g005690 | No alias | Ribosomal protein S9, putative (AHRD V3.3 *** B9RYF4_RICCO) | 0.08 | Orthogroups_2024-Update | |
Sopen01g030490 | No alias | Ribosomal protein S9/S16 | 0.08 | Orthogroups_2024-Update | |
Sopen04g014030 | No alias | Ribosomal protein S9/S16 | 0.14 | Orthogroups_2024-Update | |
Sopen05g001690 | No alias | Ribosomal protein S9/S16 | 0.03 | Orthogroups_2024-Update | |
evm.model.contig_435.17 | No alias | (at2g09990 : 160.0) Ribosomal protein S5 domain 2-like... | 0.41 | Orthogroups_2024-Update | |
evm.model.tig00000123.14 | No alias | (at2g09990 : 175.0) Ribosomal protein S5 domain 2-like... | 0.25 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | 16Dec |
CC | GO:0005840 | ribosome | IEA | 16Dec |
BP | GO:0006412 | translation | IEA | 16Dec |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000295 | adenine nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003746 | translation elongation factor activity | IEP | Predicted GO |
MF | GO:0004455 | ketol-acid reductoisomerase activity | IEP | Predicted GO |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0004814 | arginine-tRNA ligase activity | IEP | Predicted GO |
MF | GO:0005346 | purine ribonucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005347 | ATP transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005471 | ATP:ADP antiporter activity | IEP | Predicted GO |
BP | GO:0006082 | organic acid metabolic process | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006414 | translational elongation | IEP | Predicted GO |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEP | Predicted GO |
BP | GO:0006420 | arginyl-tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006862 | nucleotide transport | IEP | Predicted GO |
MF | GO:0008097 | 5S rRNA binding | IEP | Predicted GO |
MF | GO:0008509 | anion transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0008514 | organic anion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0009081 | branched-chain amino acid metabolic process | IEP | Predicted GO |
BP | GO:0009082 | branched-chain amino acid biosynthetic process | IEP | Predicted GO |
MF | GO:0015215 | nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015216 | purine nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015217 | ADP transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015238 | drug transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015301 | anion:anion antiporter activity | IEP | Predicted GO |
MF | GO:0015605 | organophosphate ester transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015748 | organophosphate ester transport | IEP | Predicted GO |
MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Predicted GO |
CC | GO:0015934 | large ribosomal subunit | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016875 | ligase activity, forming carbon-oxygen bonds | IEP | Predicted GO |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Predicted GO |
MF | GO:0019843 | rRNA binding | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0043038 | amino acid activation | IEP | Predicted GO |
BP | GO:0043039 | tRNA aminoacylation | IEP | Predicted GO |
BP | GO:0043436 | oxoacid metabolic process | IEP | Predicted GO |
BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
CC | GO:0044391 | ribosomal subunit | IEP | Predicted GO |
MF | GO:0099516 | ion antiporter activity | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000754 | Ribosomal_S9 | 44 | 176 |
No external refs found! |