1. Home
  2. Species
  3. Brassica rapa
  4. Sequence
  5. Brara.C00838.1

Brara.C00838.1


Description : beta amylase & EC_3.2 glycosylase


Gene families : OG_42_0000277 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000277_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00838.1
Cluster HCAA Clusters: Cluster_27

Target Alias Description ECC score Gene Family Method Actions
A4A49_37406 No alias inactive beta-amylase 9 0.07 Orthogroups_2024-Update
At5g18670 No alias Inactive beta-amylase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8VYW2] 0.06 Orthogroups_2024-Update
Bradi3g33730 No alias chloroplast beta-amylase 0.04 Orthogroups_2024-Update
Brara.C03939.1 No alias EC_3.2 glycosylase & beta amylase 0.04 Orthogroups_2024-Update
Glyma.11G039400 No alias chloroplast beta-amylase 0.04 Orthogroups_2024-Update
Glyma.17G150100 No alias chloroplast beta-amylase 0.03 Orthogroups_2024-Update
HORVU4Hr1G000520.1 No alias beta amylase & EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
MA_124514g0010 No alias (at3g23920 : 732.0) Encodes a chloroplast beta-amylase.... 0.03 Orthogroups_2024-Update
PSME_00015609-RA No alias (at4g17090 : 667.0) Encodes a beta-amylase targeted to... 0.05 Orthogroups_2024-Update
PSME_00015760-RA No alias (at3g23920 : 407.0) Encodes a chloroplast beta-amylase.... 0.05 Orthogroups_2024-Update
PSME_00017705-RA No alias (at4g17090 : 655.0) Encodes a beta-amylase targeted to... 0.02 Orthogroups_2024-Update
PSME_00051058-RA No alias (at3g23920 : 412.0) Encodes a chloroplast beta-amylase.... 0.02 Orthogroups_2024-Update
PSME_00053865-RA No alias (at3g23920 : 404.0) Encodes a chloroplast beta-amylase.... 0.02 Orthogroups_2024-Update
Pp1s23_21V6 No alias F14O13.12; beta-amylase, putative / 1,4-alpha-D-glucan... 0.01 Orthogroups_2024-Update
Pp1s317_42V6 No alias F14O13.12; beta-amylase, putative / 1,4-alpha-D-glucan... 0.02 Orthogroups_2024-Update
Seita.9G317500.1 No alias beta amylase & EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Solyc01g067660 No alias 1,4-alpha-glucan-maltohydrolase 0.04 Orthogroups_2024-Update
Sopen01g029610 No alias Glycosyl hydrolase family 14 0.04 Orthogroups_2024-Update
evm.model.contig_4515.3 No alias (at4g15210 : 311.0) cytosolic beta-amylase expressed in... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEA 16Dec
MF GO:0016161 beta-amylase activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
BP GO:0006020 inositol metabolic process IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0019310 inositol catabolic process IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
BP GO:0044275 cellular carbohydrate catabolic process IEP Predicted GO
BP GO:0046164 alcohol catabolic process IEP Predicted GO
BP GO:0046174 polyol catabolic process IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0050113 inositol oxygenase activity IEP Predicted GO
BP GO:1901616 organic hydroxy compound catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001554 Glyco_hydro_14 86 484
No external refs found!