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  5. Brara.C00897.1

Brara.C00897.1


Description : assembly factor involved in RuBisCo assembly *(RbcX)


Gene families : OG_42_0003251 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003251_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Brassica rapa: Brara.C00897.1
Cluster HCAA Clusters: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AC210013.4_FG018 No alias Chaperonin-like RbcX protein 0.03 Orthogroups_2024-Update
Brara.B00846.1 No alias assembly factor involved in RuBisCo assembly *(RbcX) 0.04 Orthogroups_2024-Update
HORVU5Hr1G093930.4 No alias assembly factor involved in RuBisCo assembly *(RbcX) 0.04 Orthogroups_2024-Update
HORVU5Hr1G109940.1 No alias assembly factor involved in RuBisCo assembly *(RbcX) 0.03 Orthogroups_2024-Update
Potri.001G258100 No alias Chaperonin-like RbcX protein 0.03 Orthogroups_2024-Update
Potri.009G053300 No alias Chaperonin-like RbcX protein 0.05 Orthogroups_2024-Update
Pp1s24_26V6 No alias unknown [Picea sitchensis] 0.02 Orthogroups_2024-Update
Sobic.002G345200.1 No alias assembly factor involved in RuBisCo assembly *(RbcX) 0.04 Orthogroups_2024-Update
Sopen01g034250 No alias RbcX protein 0.02 Orthogroups_2024-Update
Sopen11g025500 No alias RbcX protein 0.03 Orthogroups_2024-Update
evm.model.tig00021537.55 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0044183 protein binding involved in protein folding IEA 16Dec
BP GO:0110102 chloroplast ribulose bisphosphate carboxylase complex assembly IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Predicted GO
MF GO:0004506 squalene monooxygenase activity IEP Predicted GO
MF GO:0004602 glutathione peroxidase activity IEP Predicted GO
MF GO:0004620 phospholipase activity IEP Predicted GO
MF GO:0004629 phospholipase C activity IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
BP GO:0007165 signal transduction IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009092 homoserine metabolic process IEP Predicted GO
BP GO:0009690 cytokinin metabolic process IEP Predicted GO
BP GO:0010817 regulation of hormone levels IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Predicted GO
MF GO:0019139 cytokinin dehydrogenase activity IEP Predicted GO
BP GO:0019346 transsulfuration IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
BP GO:0034754 cellular hormone metabolic process IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
BP GO:0042445 hormone metabolic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
BP GO:0050667 homocysteine metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003435 Chaperonin_RcbX 91 190
No external refs found!